PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr18427.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

HSF

Protein Properties

Length: 270aa MW: 31311.7 Da PI: 7.0635

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr18427.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	112.3	3.3e-35	53	145	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl k+y++++d+ +++++sw e+ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgFkk+ ++ weF+++ F+kg+k+ll++i+ Dr18427.1 53 FLIKTYQLVDDPLTNHIVSWGEDHTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFKKIVADR---------WEFANEFFRKGEKHLLSEIH 140 9**************************************************************999.........**************** PP XXXXX CS HSF_DNA-bind 99 rkkse 103 r+k++ Dr18427.1 141 RRKTT 145 986 PP

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence
MSLLIRERER ERERETLGSE HWFFHSLAME YVVARSEEMA VSSDSQKPVP APFLIKTYQL 60 VDDPLTNHIV SWGEDHTTFV VWRPPEFARD LLPNYFKHNN FSSFVRQLNT YGFKKIVADR 120 WEFANEFFRK GEKHLLSEIH RRKTTHITQQ YYNVSDEXPH SSDGDAGYIL ALLEDNERLR 180 RRNSVLLSEX IHMKKLYNDI IXFLQNHVSP TMPNAKLGRI LELGSSHGSL MKGIDHAAMD 240 SSFKLFGVSI NGKKRLHPEI VGDADVEASL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G46264.1	2e-71	HSF family protein

Link Out ? help Back to Top
Ensembl	Dr18427.1