PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr18363.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

C3H

Protein Properties

Length: 327aa MW: 35787.8 Da PI: 9.0527

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr18363.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21	5.7e-07	37	60	2	25
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 k ++C+ f+ t C++G++C+F H Dr18363.1 37 KPKPCMKFFSTSGCPFGESCHFLH 60 7789******************** PP
2	zf-CCCH	26.5	1.1e-08	104	130	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC+ f C++Gd+C+FaHg+ Dr18363.1 104 FKTKLCNKFNTPEGCRFGDKCHFAHGE 130 69***********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence
MEPLSKRPRS EFDGPGFRHL AADGRDVGQQ SFSPAGKPKP CMKFFSTSGC PFGESCHFLH 60 FVPGGLSSLG VAPVASLSAA SSAANQRKPA AGPGGDPSVT VNGFKTKLCN KFNTPEGCRF 120 GDKCHFAHGE SDLRPANNLS RGNRRPMSNG PLVRAPSPAF SNRPNPAGSP TLSVSEPNFA 180 SQGYVQLNEY GAPDNNDASA VYPAGPHGAF NLMNGTLIWP LIHMRYTDFF XLFMQISQQX 240 RDKIEXLAAN LKHLSLILMH CDSLISSSVY SKRLRTFHTI TTCGYYKDRN YRSAGFALID 300 VSSDLDPWYI CMTYKMDFML YISAYKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12130.1	3e-12	C3H family protein

Link Out ? help Back to Top
Ensembl	Dr18363.1