PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr17547.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

AP2

Protein Properties

Length: 701aa MW: 75793.8 Da PI: 6.1301

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr17547.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	33.2	1.3e-10	296	352	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + ++ k + g ++ +++Aa+a++ a++k++g Dr17547.1 296 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQTrKGRQ-GGYDKEDKAARAYDLAALKYWG 352 57*****************4444.2455535555.7799999***********98 PP
2	AP2	46.7	8e-15	395	446	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g Dr17547.1 395 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 446 57**************988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 701 aa Download sequence
MGSMNNWLAF SLSPQDLQPS QTPQTHITAA EATTDISSDC FGLSGTHDSS SGIPSLPHGS 60 FSVWDSYNRT HHQPQDWGMK GMEFKGSSSE LSMLVVGSSS NQTNTMEDDE PKLEDFLGGN 120 SFSDNDQKLH PGAYDHSTNE HHYLFSNCSL QLPATATVAA STPNGGGLIN HSTGSGGSSI 180 GLSMIKTWLR NQPAPVQQPE SLNNDSVDHA VASMVGNSQG LSLSMSSGTV TASGSQSSSS 240 LPLMVVGGGG CGGEAGSSSL DEKHKGSASG IDAQNGAIAI EAVQRKSIDT FGQRTSIYRG 300 VTRHRWTGRY EAHLWDNSCR REGQTRKGRQ GGYDKEDKAA RAYDLAALKY WGTTTTTNFP 360 ISNYEKELEE MKHMTRQEYV ASLRRKSSGF SRGASIYRGV TRHHQHGRWQ ARIGRVAGNK 420 DLYLGTFSTQ EEAAEAYDIA AIKFRGLNAV TNFDMSRYDV NSILESSTLP IGGAAKRLKD 480 ASENAEASVD GRRMDDEAIT SQLTDGMNSF GSHGWPTIAF QQPQPLAYHY PYGQYRGWCK 540 PEQDSVGIAH NLQDLQQLHL SNNTHNFFQP SAINNLMSLD SSSSMEHSTG SNSVIYNTSA 600 NYQGGFIGGT SGFALPLGGT VVVDQSRNNQ SSSIEYESML PNAYYHLSQP NSAGQVVKDN 660 GYEQSSSCNT WIQASVQSME PSSSNNNNTA GPPIFTVWND A

Sequence ? help Back to Top

Protein Sequence Length: 701 aa Download sequence

MGSMNNWLAF SLSPQDLQPS QTPQTHITAA EATTDISSDC FGLSGTHDSS SGIPSLPHGS  60
FSVWDSYNRT HHQPQDWGMK GMEFKGSSSE LSMLVVGSSS NQTNTMEDDE PKLEDFLGGN  120
SFSDNDQKLH PGAYDHSTNE HHYLFSNCSL QLPATATVAA STPNGGGLIN HSTGSGGSSI  180
GLSMIKTWLR NQPAPVQQPE SLNNDSVDHA VASMVGNSQG LSLSMSSGTV TASGSQSSSS  240
LPLMVVGGGG CGGEAGSSSL DEKHKGSASG IDAQNGAIAI EAVQRKSIDT FGQRTSIYRG  300
VTRHRWTGRY EAHLWDNSCR REGQTRKGRQ GGYDKEDKAA RAYDLAALKY WGTTTTTNFP  360
ISNYEKELEE MKHMTRQEYV ASLRRKSSGF SRGASIYRGV TRHHQHGRWQ ARIGRVAGNK  420
DLYLGTFSTQ EEAAEAYDIA AIKFRGLNAV TNFDMSRYDV NSILESSTLP IGGAAKRLKD  480
ASENAEASVD GRRMDDEAIT SQLTDGMNSF GSHGWPTIAF QQPQPLAYHY PYGQYRGWCK  540
PEQDSVGIAH NLQDLQQLHL SNNTHNFFQP SAINNLMSLD SSSSMEHSTG SNSVIYNTSA  600
NYQGGFIGGT SGFALPLGGT VVVDQSRNNQ SSSIEYESML PNAYYHLSQP NSAGQVVKDN  660
GYEQSSSCNT WIQASVQSME PSSSNNNNTA GPPIFTVWND A

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20840.1	1e-123	AP2 family protein

Link Out ? help Back to Top
Ensembl	Dr17547.1