PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr17240.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

MIKC_MADS

Protein Properties

Length: 263aa MW: 30125.4 Da PI: 7.5038

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr17240.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	98.5	2.6e-31	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaev++iifs++gklye++s Dr17240.1 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIIFSTRGKLYEFCS 59 79***********************************************96 PP
2	K-box	100.2	2.8e-33	100	191	9	100
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 + +++++s+qqe+ kLk+++e Lqr+qR+llGedL++Ls keL+qLe+qL++sl+ iRs++++++l+q+ +lq++e++l e+nk+L+++l+e Dr17240.1 100 VVTRETQSCQQEYLKLKARVEALQRSQRNLLGEDLGPLSSKELEQLEHQLDSSLRLIRSTRTQHMLDQLADLQRREQMLCEANKTLKRRLDE 191 667889**********************************************************************************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVSLIIFST RGKLYEFCSS 60 SRKMEVDSEV VMESWELLVS MMKTLERYEK CNHGAPEVNV VTRETQSCQQ EYLKLKARVE 120 ALQRSQRNLL GEDLGPLSSK ELEQLEHQLD SSLRLIRSTR TQHMLDQLAD LQRREQMLCE 180 ANKTLKRRLD ESNQANQQQV WESDAHAVGF VRQAPQPPAD AAGFFHPLEC EPTLHIGYQP 240 HEQIQIAATP GSSISTFMPG WLA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G24260.1	1e-103	MIKC_MADS family protein

Link Out ? help Back to Top
Ensembl	Dr17240.1