PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr16866.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

TALE

Protein Properties

Length: 361aa MW: 39949.9 Da PI: 6.9483

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr16866.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.7	2.2e-09	289	323	21	55
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 k +yps++++ LA+++gL+++q+ +WF N+R ++ Dr16866.1 289 KWPYPSESQKLALAESTGLDQKQINNWFINQRKRH 323 579*****************************885 PP
2	ELK	39.4	1.3e-13	243	264	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK qLlrKYsgyLgsLkqEF+ Dr16866.1 243 ELKGQLLRKYSGYLGSLKQEFL 264 9********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence
MEARNGSNGT SSMMGFGGEA HGGLTPLMIM PILAGTHTST NNTTTTTNNN NSSINPLLLP 60 PSSSSSPNPK PPTDHTHLLD TTNLLKAKIM SHPQYPRLLS AYVNCHKVGA PPEVVARLEE 120 ACTSSLMVGR ASSSTFGGSS AGDDPGLDQF MEAYCEMLTK YEQELSKPFK EAMLFLSRVD 180 AQFKSLSLSS PAPPPPPPPP PLNNSNNNNH PQACGEHPER NGSSEDDVDV CENYIDPQAE 240 DRELKGQLLR KYSGYLGSLK QEFLKKRKKG KLPKEARQQL LDWWNRHYKW PYPSESQKLA 300 LAESTGLDQK QINNWFINQR KRHWKPSEDM QFVVMDAAHP HYYMDSGIGN PFALDCGPTL 360 L

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence

MEARNGSNGT SSMMGFGGEA HGGLTPLMIM PILAGTHTST NNTTTTTNNN NSSINPLLLP  60
PSSSSSPNPK PPTDHTHLLD TTNLLKAKIM SHPQYPRLLS AYVNCHKVGA PPEVVARLEE  120
ACTSSLMVGR ASSSTFGGSS AGDDPGLDQF MEAYCEMLTK YEQELSKPFK EAMLFLSRVD  180
AQFKSLSLSS PAPPPPPPPP PLNNSNNNNH PQACGEHPER NGSSEDDVDV CENYIDPQAE  240
DRELKGQLLR KYSGYLGSLK QEFLKKRKKG KLPKEARQQL LDWWNRHYKW PYPSESQKLA  300
LAESTGLDQK QINNWFINQR KRHWKPSEDM QFVVMDAAHP HYYMDSGIGN PFALDCGPTL  360
L

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	259	268	LKQEFLKKRK
2	265	269	KKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62360.1	1e-110	TALE family protein

Link Out ? help Back to Top
Ensembl	Dr16866.1