PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr16854.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

C3H

Protein Properties

Length: 454aa MW: 50348.5 Da PI: 7.3755

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr16854.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	34.2	4.3e-11	41	66	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C++++rtG C yG++C+++H+ Dr16854.1 41 PGEPDCMYYLRTGLCGYGNNCRYNHP 66 5789*********************9 PP
2	zf-CCCH	37.5	4.1e-12	84	109	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C++f++tGtCkyG++Ck++H++ Dr16854.1 84 GQPDCQYFLKTGTCKYGPTCKYHHPR 109 5799********************96 PP
3	zf-CCCH	33.9	5.2e-11	131	154	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C++++rtG Ck+G CkF+H++ Dr16854.1 131 KSCPYYMRTGSCKFGMACKFHHPQ 154 66********************97 PP
4	zf-CCCH	40	6.3e-13	271	296	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tG CkyG +Ck++H++ Dr16854.1 271 DQPECQYYMKTGSCKYGTSCKYNHPK 296 689*********************96 PP
5	zf-CCCH	29.7	1.1e-09	348	373	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C f+ +G CkyG+ Ck+ H++ Dr16854.1 348 GMAACTFYNTYGSCKYGSACKYDHPF 373 6789********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 454 aa Download sequence
MPDNVASSSP DAVEEAMRRL NLEENPDGVD DAHGSPYPDR PGEPDCMYYL RTGLCGYGNN 60 CRYNHPTHIG LGTQYTGELP ERTGQPDCQY FLKTGTCKYG PTCKYHHPRD KHDSRPVLLN 120 IYGLPMRQDE KSCPYYMRTG SCKFGMACKF HHPQPAAPVG AIYPTTGSSS YGFTGSSXAT 180 PTXLPLLGGL SAWTLSRPPY VSNNMQGLPA YMPVTIPPSQ GAIHLQHGWS TYVGNAGHAP 240 STDVLGLQMS NSKQHSQSGS SNQPYFPERP DQPECQYYMK TGSCKYGTSC KYNHPKERNI 300 SLANYTVGPH GLPLRPVNPT TCHIYFFSIT FLIFYNYLMA FILFGYKGMA ACTFYNTYGS 360 CKYGSACKYD HPFMGYYNYN LPAYSTGFNT ERNPQTSWSS VETLPSRASR FNDQQSGTSN 420 GTQDVDKSVD GDHSAKTSPT HTEPYSEPPQ DHSN

Sequence ? help Back to Top

Protein Sequence Length: 454 aa Download sequence

MPDNVASSSP DAVEEAMRRL NLEENPDGVD DAHGSPYPDR PGEPDCMYYL RTGLCGYGNN  60
CRYNHPTHIG LGTQYTGELP ERTGQPDCQY FLKTGTCKYG PTCKYHHPRD KHDSRPVLLN  120
IYGLPMRQDE KSCPYYMRTG SCKFGMACKF HHPQPAAPVG AIYPTTGSSS YGFTGSSXAT  180
PTXLPLLGGL SAWTLSRPPY VSNNMQGLPA YMPVTIPPSQ GAIHLQHGWS TYVGNAGHAP  240
STDVLGLQMS NSKQHSQSGS SNQPYFPERP DQPECQYYMK TGSCKYGTSC KYNHPKERNI  300
SLANYTVGPH GLPLRPVNPT TCHIYFFSIT FLIFYNYLMA FILFGYKGMA ACTFYNTYGS  360
CKYGSACKYD HPFMGYYNYN LPAYSTGFNT ERNPQTSWSS VETLPSRASR FNDQQSGTSN  420
GTQDVDKSVD GDHSAKTSPT HTEPYSEPPQ DHSN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G04990.2	2e-87	C3H family protein

Link Out ? help Back to Top
Ensembl	Dr16854.1