PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr16665.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

CAMTA

Protein Properties

Length: 1009aa MW: 112003 Da PI: 7.1801

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr16665.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	177.8	1.4e-55	20	135	2	117
CG-1 2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywl 101 l+ k+rwl+++ei++iL n+++++lt +++ +p+sgsl+L++rk++ryfrkDG+sw+kkkdgktvrE+hekLK g+++vl+cyYah+e+n++fqrr+yw+ Dr16665.1 20 LEAKNRWLRPSEICEILRNYKNFTLTPDPPYKPSSGSLFLFDRKVLRYFRKDGHSWRKKKDGKTVREAHEKLKCGSIDVLHCYYAHGEDNENFQRRSYWM 119 5679********************************************************************************************** PP CG-1 102 Leeelekivlvhylev 117 L+ +le+ivlvhy++v Dr16665.1 120 LDGHLEHIVLVHYRDV 135 ************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 1009 aa Download sequence
MAEGWRFAVD HQLDIGQILL EAKNRWLRPS EICEILRNYK NFTLTPDPPY KPSSGSLFLF 60 DRKVLRYFRK DGHSWRKKKD GKTVREAHEK LKCGSIDVLH CYYAHGEDNE NFQRRSYWML 120 DGHLEHIVLV HYRDVNEGSS SSMPHLLNSN MHNAQHSSAH TLSSELEGAD SGDDYSGLSK 180 PLTSLYSRQG HSQNSTLHED HYKIRGTSQS AGFCGGTDCV TTSTAWRETP GKYDNLQDQK 240 ISLEQPNCTN SIAMAMTDSV LGFNTSTNGI FLNDTLLQGP TGSSMTRAQV KPSCSANANS 300 PVSHNSTVGT ASVMHCVPDE HHFPVAPQFK SDRDCQADFA AADQPLEFLK EASYSKQNTA 360 KGNIGNGEFG ELKKLDSFGR WMNNEIGRDC DNSLMASDSG SYWNTIDTQN DDKEVTSLSV 420 HMQLDTESLG PSISQEQLFS ILDFSPDWAY SDVETKVLIS GTFLGGINPN SIKWCCMFGE 480 YEVSAEVLTE NVLRCRAPPH TPGRVPFYIT RSNRLACSEV REFEYREGLS NGKSLSRKRE 540 SGDEIHLHIC FAKMLTLGVV ACSLEGCHNC ARISDLILSS SRENNGWGEI ELQSKAFQRC 600 QGDLRDALIQ KLLEGKLVEW LACRAHEESK GPNVLDEDGM GVIHYASALG YEWAINLIVG 660 AGVNPNFRDA RGRTGLHWAA FYGREEAVVT LLKLGAAPGL VEDPSSAYPE GRTAADLASS 720 RGHKGIGGYL AEADLTSHLS TITLEESIID NVAANLAAER AIEKVSAQSL VPLDGEEELV 780 PLRGSLAAVR NSAQAAARIQ AAFRMHSFRQ RELIKSRENP EIPSEVLIAS SLCKVLKIDH 840 FNDSLHAAAA VKIQQKFRGW KGRKDFLKIR NRIVKIQAHV RGHQVRRQYR KVVWSVSIVE 900 KAILRWRRKG SGLRGYRADK PAAPVAADIG PTDDYEYLRL GRKLKVAGVE KALARVQSMV 960 RHPEGRDQYM RLLASSCGPK FGDGQSSSAQ VQCAEEKRVA EDLLKTMTD

Sequence ? help Back to Top

Protein Sequence Length: 1009 aa Download sequence

MAEGWRFAVD HQLDIGQILL EAKNRWLRPS EICEILRNYK NFTLTPDPPY KPSSGSLFLF  60
DRKVLRYFRK DGHSWRKKKD GKTVREAHEK LKCGSIDVLH CYYAHGEDNE NFQRRSYWML  120
DGHLEHIVLV HYRDVNEGSS SSMPHLLNSN MHNAQHSSAH TLSSELEGAD SGDDYSGLSK  180
PLTSLYSRQG HSQNSTLHED HYKIRGTSQS AGFCGGTDCV TTSTAWRETP GKYDNLQDQK  240
ISLEQPNCTN SIAMAMTDSV LGFNTSTNGI FLNDTLLQGP TGSSMTRAQV KPSCSANANS  300
PVSHNSTVGT ASVMHCVPDE HHFPVAPQFK SDRDCQADFA AADQPLEFLK EASYSKQNTA  360
KGNIGNGEFG ELKKLDSFGR WMNNEIGRDC DNSLMASDSG SYWNTIDTQN DDKEVTSLSV  420
HMQLDTESLG PSISQEQLFS ILDFSPDWAY SDVETKVLIS GTFLGGINPN SIKWCCMFGE  480
YEVSAEVLTE NVLRCRAPPH TPGRVPFYIT RSNRLACSEV REFEYREGLS NGKSLSRKRE  540
SGDEIHLHIC FAKMLTLGVV ACSLEGCHNC ARISDLILSS SRENNGWGEI ELQSKAFQRC  600
QGDLRDALIQ KLLEGKLVEW LACRAHEESK GPNVLDEDGM GVIHYASALG YEWAINLIVG  660
AGVNPNFRDA RGRTGLHWAA FYGREEAVVT LLKLGAAPGL VEDPSSAYPE GRTAADLASS  720
RGHKGIGGYL AEADLTSHLS TITLEESIID NVAANLAAER AIEKVSAQSL VPLDGEEELV  780
PLRGSLAAVR NSAQAAARIQ AAFRMHSFRQ RELIKSRENP EIPSEVLIAS SLCKVLKIDH  840
FNDSLHAAAA VKIQQKFRGW KGRKDFLKIR NRIVKIQAHV RGHQVRRQYR KVVWSVSIVE  900
KAILRWRRKG SGLRGYRADK PAAPVAADIG PTDDYEYLRL GRKLKVAGVE KALARVQSMV  960
RHPEGRDQYM RLLASSCGPK FGDGQSSSAQ VQCAEEKRVA EDLLKTMTD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64220.2	0.0	CAMTA family protein

Link Out ? help Back to Top
Ensembl	Dr16665.1