PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr16474.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family C2H2
Protein Properties Length: 354aa    MW: 39287.4 Da    PI: 9.4455
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr16474.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.89.2e-0679101123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ++C++C+k F r  nL+ H r H
  Dr16474.1  79 FVCEICNKGFQRDQNLQLHRRGH 101
                89*******************88 PP
2zf-C2H214.10.00014156178123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                +kC +C+k++  +s+ k Hi+++
  Dr16474.1 156 WKCDKCSKRYAVHSDWKAHIKNC 178
                58*******************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    
MFPGSSMSNP SSISDEATGT ASSNNPNTFS HLFIPISPPP LHHQHQTKQK KKRSQPGNPD  60
PEAEVVALSP KSLMATNRFV CEICNKGFQR DQNLQLHRRG HNLPWKLRQR NNKEVVKKRV  120
YVCPEPSCVH HHPSRALGDL TGIKKHYSRK HGEKKWKCDK CSKRYAVHSD WKAHIKNCGT  180
KEYKCDCGIL FSRKDSFITH RAFCDALAQE SARVIAAAAA AAAASATTTI IPPPPPPPPP  240
PPLYLPFASW NPNFSTSTPS LLFHGKPEDQ LLSMSTTSSQ HNNNAMAVMS TTDGYNASRL  300
SFDVGDLSTW QKNDRLTRDF LGVDDDGSMG MDMTTRGEHT APFGIPTWSD FQSI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.11e-107C2H2 family protein