PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr16468.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

C3H

Protein Properties

Length: 1127aa MW: 124582 Da PI: 8.8892

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr16468.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	25	3.3e-08	239	260	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e+Cr+f + G C++G++C+F H+ Dr16468.1 239 EPCRDFTA-GRCRRGSQCRFLHD 260 89****.***********7 PP

Sequence ? help Back to Top
Protein Sequence Length: 1127 aa Download sequence
MTENLRKRVS KWDVETTPDG DVPSKIGQEN LLSQXSDVSL KHQETNLDLN ASKCDTNQIS 60 MHTDIEGNIT VQISESSEVE QLTEYADDGS IRTFDDSSKM SEYNKHSDME IDPEDDCKKS 120 CQELISESQI KVKDGGDXET EGRGTAPEQS NRRNMSPGVH MQRRRSRSNS PRNGRNRSYR 180 SRSNSRGRSK SRSWSRSWSQ SRSRSRSWSC SGSRSPSHRS RRGSEKRIGK ERMVSRGAEP 240 CRDFTAGRCR RGSQCRFLHD DARRQYEKHP SRVTLEKGDS NVRDDARRQY EKHSSRGTLE 300 KGDSNLRDDA RRQYEKHFSR GILEKGDSNL HDDARKPYNK HSSRSTLEKA DGNLHDDTRR 360 QYDKYFSRGT SEKGDSKFGR GRSSGFDVKD NVTSLQAERD YSHYKQSNRN GNQYDDDRKK 420 SELHRNNRSS EHSQRGSICR LIHHESSQGG LNADGEAKEK MHGRRDADAS FQRRIEPHKA 480 DDNAPGQFFA EGHGQHGDVS RFSHQDVTHV GSKERLRGGN RLGEDVIVLS VPNLGDRPSS 540 TYLNNSSQRI SNVASATKGA SVEFLGREVL RQDPHLPKYT NPVESKYENL SQEAPQRSVP 600 SQIRNGTPIT SEQHQQAVAV STKSMPDSTS VQQSSTMKVG GSGVNPFPGD ALGQNNIHHA 660 IVPPLHRQNF XPNVQLQQAV SSFASSGQMH QQATFPLPLN QLVGLQGPST PQNFNIGSQS 720 LVVLPSPLIG QRFQSPMLGV QGQQNVQVLQ NGQIQQNYNL IGQNQQRLPT PYAGHNQLNV 780 NLNGQIQQSI PLPSHIPQQQ VPGNLIVRSQ TSLAPIYSGQ GQQNHDFGSQ SQLSLPLSQD 840 LQIQQALSSL GSNGQKQHAA LQPPLDTRSX KPNEQSHQIN LQQSANSHQP TQTAGDGLTQ 900 KIDIPAKPSE LXSDTTTRKV VTSEQAVQIS NLSASLAQFF GSAQNLPQLY ATLNPLPVGG 960 SAPSHPFLNP GSARPVVPAA IPPTISIQPG QGEVVQQHQD PASDSAEPII PXTSDLPPGF 1020 SANPVGQKDL KLENSQASKG MTKLAFTXEE EQAEVIADNE LKEVNEAETD QTKKEQAARS 1080 EDADLEIKTD GESKKNKDAK GIRSGIVTEI NVSVLVSGKS AFHLLLP

Sequence ? help Back to Top

Protein Sequence Length: 1127 aa Download sequence

MTENLRKRVS KWDVETTPDG DVPSKIGQEN LLSQXSDVSL KHQETNLDLN ASKCDTNQIS  60
MHTDIEGNIT VQISESSEVE QLTEYADDGS IRTFDDSSKM SEYNKHSDME IDPEDDCKKS  120
CQELISESQI KVKDGGDXET EGRGTAPEQS NRRNMSPGVH MQRRRSRSNS PRNGRNRSYR  180
SRSNSRGRSK SRSWSRSWSQ SRSRSRSWSC SGSRSPSHRS RRGSEKRIGK ERMVSRGAEP  240
CRDFTAGRCR RGSQCRFLHD DARRQYEKHP SRVTLEKGDS NVRDDARRQY EKHSSRGTLE  300
KGDSNLRDDA RRQYEKHFSR GILEKGDSNL HDDARKPYNK HSSRSTLEKA DGNLHDDTRR  360
QYDKYFSRGT SEKGDSKFGR GRSSGFDVKD NVTSLQAERD YSHYKQSNRN GNQYDDDRKK  420
SELHRNNRSS EHSQRGSICR LIHHESSQGG LNADGEAKEK MHGRRDADAS FQRRIEPHKA  480
DDNAPGQFFA EGHGQHGDVS RFSHQDVTHV GSKERLRGGN RLGEDVIVLS VPNLGDRPSS  540
TYLNNSSQRI SNVASATKGA SVEFLGREVL RQDPHLPKYT NPVESKYENL SQEAPQRSVP  600
SQIRNGTPIT SEQHQQAVAV STKSMPDSTS VQQSSTMKVG GSGVNPFPGD ALGQNNIHHA  660
IVPPLHRQNF XPNVQLQQAV SSFASSGQMH QQATFPLPLN QLVGLQGPST PQNFNIGSQS  720
LVVLPSPLIG QRFQSPMLGV QGQQNVQVLQ NGQIQQNYNL IGQNQQRLPT PYAGHNQLNV  780
NLNGQIQQSI PLPSHIPQQQ VPGNLIVRSQ TSLAPIYSGQ GQQNHDFGSQ SQLSLPLSQD  840
LQIQQALSSL GSNGQKQHAA LQPPLDTRSX KPNEQSHQIN LQQSANSHQP TQTAGDGLTQ  900
KIDIPAKPSE LXSDTTTRKV VTSEQAVQIS NLSASLAQFF GSAQNLPQLY ATLNPLPVGG  960
SAPSHPFLNP GSARPVVPAA IPPTISIQPG QGEVVQQHQD PASDSAEPII PXTSDLPPGF  1020
SANPVGQKDL KLENSQASKG MTKLAFTXEE EQAEVIADNE LKEVNEAETD QTKKEQAARS  1080
EDADLEIKTD GESKKNKDAK GIRSGIVTEI NVSVLVSGKS AFHLLLP

Link Out ? help Back to Top
Ensembl	Dr16468.1