PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr16185.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

MYB_related

Protein Properties

Length: 576aa MW: 64793.2 Da PI: 7.2675

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr16185.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	37.3	6.2e-12	109	149	4	45
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 W ++E+ ll+++++++G g+W+ +a+++g +++ qc++++ Dr16185.1 109 WNADEEILLLEGIEMYGLGNWTEVAEHVG-TKSKTQCIEHYT 149 ***************************.********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 576 aa Download sequence
MGRSRGVPNS TDDDATQRSK RRRATSTGEA TEPMVAGGTG PNEGKKALYH CNYCNKDISG 60 KIRIKCTKCP DFDLCVECFS VGAEVTPHKS NHPYRVMDNL SFPLICPDWN ADEEILLLEG 120 IEMYGLGNWT EVAEHVGTKS KTQCIEHYTT AYMNSPCYPL PDMSRVNGKN RKELLAMAKV 180 QGEGKKGISL LSDVTPKEES PFSPSRVKVE DLSGEASAGR SPSSLGAGAS KKASNMGMSK 240 DGPDGSKTED PQLDRSVGVK KPKYSGDEGP SMTELSGYNP KRQEFDPEYD NDAEQSLAEM 300 EFKENDSEAD RELKLRVLRI YLSRLDERKR RKDFILERNL LYPNPFEKEL SIEDRELYQR 360 YKVFMRFQSQ EEHEALVRSV IEERKIRRRI QELQECRAAG CRTLAEAKLY TEQKRKRELE 420 MSAQKTKESG QVVTASKLPQ KAGRPMSREK LESDGSPRNI VDSHKIKGAG FDSSSKDSPS 480 ATMGHPTPKS FDEWDITGLP GADLLNETEQ QLCCQSRLLP SHYLKIQEVL VQEILKGALL 540 KKSDAHHLFK VDPSKVDRIY DIVIRKLGHL DESQLV

Sequence ? help Back to Top

Protein Sequence Length: 576 aa Download sequence

MGRSRGVPNS TDDDATQRSK RRRATSTGEA TEPMVAGGTG PNEGKKALYH CNYCNKDISG  60
KIRIKCTKCP DFDLCVECFS VGAEVTPHKS NHPYRVMDNL SFPLICPDWN ADEEILLLEG  120
IEMYGLGNWT EVAEHVGTKS KTQCIEHYTT AYMNSPCYPL PDMSRVNGKN RKELLAMAKV  180
QGEGKKGISL LSDVTPKEES PFSPSRVKVE DLSGEASAGR SPSSLGAGAS KKASNMGMSK  240
DGPDGSKTED PQLDRSVGVK KPKYSGDEGP SMTELSGYNP KRQEFDPEYD NDAEQSLAEM  300
EFKENDSEAD RELKLRVLRI YLSRLDERKR RKDFILERNL LYPNPFEKEL SIEDRELYQR  360
YKVFMRFQSQ EEHEALVRSV IEERKIRRRI QELQECRAAG CRTLAEAKLY TEQKRKRELE  420
MSAQKTKESG QVVTASKLPQ KAGRPMSREK LESDGSPRNI VDSHKIKGAG FDSSSKDSPS  480
ATMGHPTPKS FDEWDITGLP GADLLNETEQ QLCCQSRLLP SHYLKIQEVL VQEILKGALL  540
KKSDAHHLFK VDPSKVDRIY DIVIRKLGHL DESQLV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	328	333	RKRRKD

Link Out ? help Back to Top
Ensembl	Dr16185.1