PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr16100.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

G2-like

Protein Properties

Length: 366aa MW: 40776 Da PI: 6.1128

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr16100.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	98.4	5.2e-31	234	289	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rFv ++qLGG+++AtPk+i+elmkv+gLt+++vkSHLQkYRl+ Dr16100.1 234 KARRCWSPELHRRFVISLQQLGGAQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 289 68****************************************************97 PP
2	Myb_DNA-binding	34.6	4.5e-11	236	287	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r W++e++ ++v +qlGg t+k I + m g+t ++ks++qky+ Dr16100.1 236 RRCWSPELHRRFVISLQQLGGAqvaTPKQIRELMKvDGLTNDEVKSHLQKYR 287 568***************99***************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence
MASIAPEMSL DLKLSATRTI GGFLREASAM GDGEARVAKL EEFVRVLEEE KRKIEAFKRE 60 LPLCMVLVTD VIGGLKEELE QCRGDRFDRE VEEFMPMKRS KLEEEMEERA KLELDSRDKM 120 NWMSSAQLWS DNYSDNDKKK TSEEKGEKQP GLDLEPRNKN RGAFIPFNGV LPAEKDEKPA 180 GPLPDLSLLS SAVKSSRPVA MMQEDHLYGG SNGGGRAPTS TGLSLQAQQQ PARKARRCWS 240 PELHRRFVIS LQQLGGAQVA TPKQIRELMK VDGLTNDEVK SHLQKYRLHA RRAPNSSVQA 300 NQQVLVMGSL WPSQDHYTAV LSQQSASPSG SPQSPLQLAD VSRAISVTAG DSYEEEDGKS 360 ESYGWK

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence

MASIAPEMSL DLKLSATRTI GGFLREASAM GDGEARVAKL EEFVRVLEEE KRKIEAFKRE  60
LPLCMVLVTD VIGGLKEELE QCRGDRFDRE VEEFMPMKRS KLEEEMEERA KLELDSRDKM  120
NWMSSAQLWS DNYSDNDKKK TSEEKGEKQP GLDLEPRNKN RGAFIPFNGV LPAEKDEKPA  180
GPLPDLSLLS SAVKSSRPVA MMQEDHLYGG SNGGGRAPTS TGLSLQAQQQ PARKARRCWS  240
PELHRRFVIS LQQLGGAQVA TPKQIRELMK VDGLTNDEVK SHLQKYRLHA RRAPNSSVQA  300
NQQVLVMGSL WPSQDHYTAV LSQQSASPSG SPQSPLQLAD VSRAISVTAG DSYEEEDGKS  360
ESYGWK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03500.1	1e-48	G2-like family protein

Link Out ? help Back to Top
Ensembl	Dr16100.1