PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr16025.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family C3H
Protein Properties Length: 537aa    MW: 57704.9 Da    PI: 7.095
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr16025.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.35.4e-08240260526
                --SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                +C+ f++ G C+ Gd C +aHg
  Dr16025.1 240 PCPEFRK-GSCRNGDACEYAHG 260
                8******.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    
MEDVSSLLLE LSASDDLAGF KKVIEVSGVA VDAVVAPWYG RSAGRDRRMG FNLRTPLQIA  60
AVYGSISVLN YILSDLTAVD VNRRSGDDAA TALHLAVAGC SPGSIDAIKL LVSANADVDA  120
LDXGGNRPAD LIPKLIAVNS VVKTLETLVK ASPSSPSSPS RVSSPAKETE VKEKKEYPPD  180
LTLPDIKNGI YGTDEFRMYS FKIKPCSRAY SHDWTECPFV HPGENARRRD PRKYLYSCVP  240
CPEFRKGSCR NGDACEYAHG VFECWLHPAQ YRTRLCKDET GCNRRVCFFA HKPEELRMVN  300
PSTVSASMXS SPRASSLDMA TAMLLMQQPS SPTTNRLKST LSARNLQLDL DLMALEAAAA  360
VAASSPRSSN WPASRGSDYG ELLQGLSLKQ SPYSSASPSI PXLDHSLATA IMNSRASSFA  420
KRSQSFIDRG AXARQSTLAP TSSAVAPXAG FSGWGSPSGK LDWGIEGEEL NKLRKSASFG  480
FRNNGAAAPA ALDEPDLSWV QSLVKDAPAQ AGAPMQYGLE SGGTEMLPSW AEEQMVA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55980.11e-133C3H family protein