PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr16003.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

AP2

Protein Properties

Length: 451aa MW: 49251.2 Da PI: 6.2539

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr16003.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.6	5.5e-17	131	180	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g Dr16003.1 131 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 180 78*****************......55**********************997 PP
2	AP2	40.4	7.5e-13	224	274	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+++ +Aa+a+++a+ k +g Dr16003.1 224 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEIDAARAYDKAAIKCNG 274 89******.7**5553..2.26******99********99776 PP

Sequence ? help Back to Top
Protein Sequence Length: 451 aa Download sequence
MVIDLNESSS SVEKTVVGEG SGTSESSVVN GEASSNPGDE DSGGIEFGLL KSGEEEVEGE 60 VEMSGCVTRQ FFPTVPAVEV VTGGGSSVKR PHCVDLGFCP GGTGGXGVLP PQQAPQVQVK 120 KSRRGPRSRS SQYRGVTFYR RTGRWESHIW DCGKQVYLGG FDTAHAAARA YDRAAIKFRG 180 VDADINFNLT DYEDDLKQQM KNLTKEEFVH ILRRQSTGFS RGSSKYRGVT LHKCGRWEAR 240 MGQFLGKKYI YLGLFDSEID AARAYDKAAI KCNGREAVTN FEPSTYDGEL LPDVDIDAAG 300 VELDLNLRIS QPAVHSPKQD DNSMDLLQLQ SGSFDGSDPK KAXIADPCSH LAMQPYGLAK 360 MAKQPQVWPA PYASFLPNYE ERTIGKRPHE MGSMAPPPNW RPWQQMXSSV PLSPFSSAAS 420 SGFSNNITPP ASFPPASSPT TTNQLFYHNQ N

Sequence ? help Back to Top

Protein Sequence Length: 451 aa Download sequence

MVIDLNESSS SVEKTVVGEG SGTSESSVVN GEASSNPGDE DSGGIEFGLL KSGEEEVEGE  60
VEMSGCVTRQ FFPTVPAVEV VTGGGSSVKR PHCVDLGFCP GGTGGXGVLP PQQAPQVQVK  120
KSRRGPRSRS SQYRGVTFYR RTGRWESHIW DCGKQVYLGG FDTAHAAARA YDRAAIKFRG  180
VDADINFNLT DYEDDLKQQM KNLTKEEFVH ILRRQSTGFS RGSSKYRGVT LHKCGRWEAR  240
MGQFLGKKYI YLGLFDSEID AARAYDKAAI KCNGREAVTN FEPSTYDGEL LPDVDIDAAG  300
VELDLNLRIS QPAVHSPKQD DNSMDLLQLQ SGSFDGSDPK KAXIADPCSH LAMQPYGLAK  360
MAKQPQVWPA PYASFLPNYE ERTIGKRPHE MGSMAPPPNW RPWQQMXSSV PLSPFSSAAS  420
SGFSNNITPP ASFPPASSPT TTNQLFYHNQ N

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36920.1	4e-94	AP2 family protein

Link Out ? help Back to Top
Ensembl	Dr16003.1