PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr15860.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

MYB_related

Protein Properties

Length: 1261aa MW: 140189 Da PI: 8.4646

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr15860.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	30.2	1.1e-09	37	73	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W++eE e++++a +++G++ Wk++a + ++R++ ++ Dr15860.1 37 QWSKEELERFYEAYRKYGKD-WKKVAGSVRNNRSPDMV 73 6***************99.*******99998776 PP

Sequence ? help Back to Top
Protein Sequence Length: 1261 aa Download sequence
MVGEQARPEI GRRPPGRRRG SRVSQPKKKI SDMLGPQWSK EELERFYEAY RKYGKDWKKV 60 AGSVRNNRSP DMVETLYNMN KVKPVTLDYL QISYSYVAQI MFSDAYLSLP EGTATLAGLI 120 AMMTDHYNIM DASNSDRESN DVSRTPRKPQ QRSRGKVRLI SKGSDGNSPD HLQNQSTSSS 180 YGCLSLLKKK RSGDIFAGSQ PRAVGKRTPR IPVSYAYGKD DRAKFTPTKP GVRSGVNSAD 240 DEGAHVAALA LAEASQRGGS PQISRTPGRR TDHVRSSPPP SDGRKNGDSE MVNSKFTCDG 300 GDAMEGSLES REAENADFGK DINYLMETEG AGTTEILEKV KRLPGKASKE NGSAHLDDER 360 EACSGTEEGL NIRKVKDEED VEVADGKYAQ VSRGSRKRSR QLYFGDESSG LDALETLADL 420 SLNILMPAST VESESSVQVK EEEKNIDVDE KPSVAESLPI NHHRERSKIS GKKEKSISAV 480 GGVDVVTRRS SKLLKGMPYD SKALNELKDE ICASSSRAMR KRKRKPMNEK VSKSDPDNEY 540 CASESQKMEA SMEEGKRSTI KSKRVNQGTP PAKQGKLVKP LERSSPNADS GRAARDLTEA 600 TAQISMTKQS SLPTKARTLR KSELKALAQK DLKPSENSTD EHLDQSVYPV NDKSILLKEK 660 FSHCVGSRSL RRWCVYEWFY SAIDYPWFAK SEFVEYLNHV RLGHIPRLTR VEWGVIRSSL 720 GKPRRLSDHF LREEREKLEQ YRESVRTHYS ELRSGVRDGL PTDLARPLSV GQRVIAYHPK 780 TREIHDGSIL TVDSNRCRVQ FDRPDLGVEF VMDINCMPLN PSENMPEVLR RQNIGVDRYC 840 NSLTDIKLDD QPKDWKIKGA PKSGLAENLD MTDGIAHITS NYSMNTLLKQ AKEDTVDATV 900 QAKAAANEVA VAAQQAMYSQ PCTLAQLQAR EADIRALTEL TRALDKKVGI QSIDFNQMEV 960 GPHLQTSVFR LMSQVAHAFD RHMEALLLEL RHMNEEVSGK QKDGDFIKDF EIFKKQYALV 1020 LLQLRDANDQ VAAALLYLRQ RNSYNGNSTP PWIRPMENSE GPALPPSSFN PSAFLNREAG 1080 CHVVEIVDTS RRKARVLVGA AVQAVCSLKE GDDAFVRVGE ALDFPNSRNS EPCVNSRQVH 1140 ADSGPGNSVN QENTSPCLSE PTMLGPLGSK PQISSDSNGT HYPSELITSC VATLLMIQTC 1200 TERQYPPAEV AQILDSALTS LQPYSQQNLP VYREIETCMG IIKNQMLALL PTPSAVETPI 1260 M

Sequence ? help Back to Top

Protein Sequence Length: 1261 aa Download sequence

MVGEQARPEI GRRPPGRRRG SRVSQPKKKI SDMLGPQWSK EELERFYEAY RKYGKDWKKV  60
AGSVRNNRSP DMVETLYNMN KVKPVTLDYL QISYSYVAQI MFSDAYLSLP EGTATLAGLI  120
AMMTDHYNIM DASNSDRESN DVSRTPRKPQ QRSRGKVRLI SKGSDGNSPD HLQNQSTSSS  180
YGCLSLLKKK RSGDIFAGSQ PRAVGKRTPR IPVSYAYGKD DRAKFTPTKP GVRSGVNSAD  240
DEGAHVAALA LAEASQRGGS PQISRTPGRR TDHVRSSPPP SDGRKNGDSE MVNSKFTCDG  300
GDAMEGSLES REAENADFGK DINYLMETEG AGTTEILEKV KRLPGKASKE NGSAHLDDER  360
EACSGTEEGL NIRKVKDEED VEVADGKYAQ VSRGSRKRSR QLYFGDESSG LDALETLADL  420
SLNILMPAST VESESSVQVK EEEKNIDVDE KPSVAESLPI NHHRERSKIS GKKEKSISAV  480
GGVDVVTRRS SKLLKGMPYD SKALNELKDE ICASSSRAMR KRKRKPMNEK VSKSDPDNEY  540
CASESQKMEA SMEEGKRSTI KSKRVNQGTP PAKQGKLVKP LERSSPNADS GRAARDLTEA  600
TAQISMTKQS SLPTKARTLR KSELKALAQK DLKPSENSTD EHLDQSVYPV NDKSILLKEK  660
FSHCVGSRSL RRWCVYEWFY SAIDYPWFAK SEFVEYLNHV RLGHIPRLTR VEWGVIRSSL  720
GKPRRLSDHF LREEREKLEQ YRESVRTHYS ELRSGVRDGL PTDLARPLSV GQRVIAYHPK  780
TREIHDGSIL TVDSNRCRVQ FDRPDLGVEF VMDINCMPLN PSENMPEVLR RQNIGVDRYC  840
NSLTDIKLDD QPKDWKIKGA PKSGLAENLD MTDGIAHITS NYSMNTLLKQ AKEDTVDATV  900
QAKAAANEVA VAAQQAMYSQ PCTLAQLQAR EADIRALTEL TRALDKKVGI QSIDFNQMEV  960
GPHLQTSVFR LMSQVAHAFD RHMEALLLEL RHMNEEVSGK QKDGDFIKDF EIFKKQYALV  1020
LLQLRDANDQ VAAALLYLRQ RNSYNGNSTP PWIRPMENSE GPALPPSSFN PSAFLNREAG  1080
CHVVEIVDTS RRKARVLVGA AVQAVCSLKE GDDAFVRVGE ALDFPNSRNS EPCVNSRQVH  1140
ADSGPGNSVN QENTSPCLSE PTMLGPLGSK PQISSDSNGT HYPSELITSC VATLLMIQTC  1200
TERQYPPAEV AQILDSALTS LQPYSQQNLP VYREIETCMG IIKNQMLALL PTPSAVETPI  1260
M

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	13	23	RPPGRRRGSRV
2	520	525	RKRKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	1e-170	MYB_related family protein

Link Out ? help Back to Top
Ensembl	Dr15860.1