PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr15621.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

bHLH

Protein Properties

Length: 522aa MW: 56214.9 Da PI: 8.2799

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr15621.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	51	2.6e-16	468	514	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K++Ka++L +A+eY+k Lq Dr15621.1 468 VHNLSERRRRDRINERMRALQELIPNC-----NKVDKASMLDEAIEYLKTLQ 514 6***********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 522 aa Download sequence
MPLSEVHRTA TRKELENSQS RMTNYSSDLS SFMPDDEFVE LLWENGQLVV QCQSNRPKKS 60 FFTSNASSQT GKAHDKNGNV KMGRFSSMDQ VVDELSPVVP SVVGLNSQDD DDNNNINGSW 120 MNYPIEDPLV QSDYCSEFLS EFSGVDLNSV ATNAKGNSNV VATTTTERIT SFGFGRASQN 180 IQVGNASRGI TGGSDPPSRI RKSQLFQLPQ QCQSAIPNSK PKEATEYHNH GSTSSHQGSS 240 ADGGGVLLKT WSQKQQDTAN TKVPQASSGS RGGAGLMNFS HFSRAASLFK ANLQGSDRLR 300 SNKKASTAGS SKPLESSLIN SNSGFKSISG AIQGKPASAL LHDVAQRSST KNIQDVASVQ 360 QAEAHKNHGK VVIASPKPSD QSKGQSTGPS GKQETEKAPE APVASSVCSG NSVGAASNDP 420 IYGAAKRKCR EGEESEYQSD DVEDDSVGLK ISDSTGCKSA KRSRAAEVHN LSERRRRDRI 480 NERMRALQEL IPNCNKVDKA SMLDEAIEYL KTLQLQVQVK TL

Sequence ? help Back to Top

Protein Sequence Length: 522 aa Download sequence

MPLSEVHRTA TRKELENSQS RMTNYSSDLS SFMPDDEFVE LLWENGQLVV QCQSNRPKKS  60
FFTSNASSQT GKAHDKNGNV KMGRFSSMDQ VVDELSPVVP SVVGLNSQDD DDNNNINGSW  120
MNYPIEDPLV QSDYCSEFLS EFSGVDLNSV ATNAKGNSNV VATTTTERIT SFGFGRASQN  180
IQVGNASRGI TGGSDPPSRI RKSQLFQLPQ QCQSAIPNSK PKEATEYHNH GSTSSHQGSS  240
ADGGGVLLKT WSQKQQDTAN TKVPQASSGS RGGAGLMNFS HFSRAASLFK ANLQGSDRLR  300
SNKKASTAGS SKPLESSLIN SNSGFKSISG AIQGKPASAL LHDVAQRSST KNIQDVASVQ  360
QAEAHKNHGK VVIASPKPSD QSKGQSTGPS GKQETEKAPE APVASSVCSG NSVGAASNDP  420
IYGAAKRKCR EGEESEYQSD DVEDDSVGLK ISDSTGCKSA KRSRAAEVHN LSERRRRDRI  480
NERMRALQEL IPNCNKVDKA SMLDEAIEYL KTLQLQVQVK TL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	473	478	ERRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09530.2	4e-27	bHLH family protein

Link Out ? help Back to Top
Ensembl	Dr15621.1