PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr15177.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

bHLH

Protein Properties

Length: 489aa MW: 55354.3 Da PI: 4.7381

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr15177.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43.7	4.8e-14	351	398	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++h +ErrRR++iN++f Lr+++P +K++K +iLe ++eY+ Lq Dr15177.1 351 TNHVLAERRRREKINKRFIVLRSIVPFV-----TKMDKTSILESTIEYLERLQ 398 6899*********************8.....8***************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 489 aa Download sequence
MQLQHSLQLS VQSINWTYSI FWQLNPQNQV LEWKDGYYNG IIKSRKTVLG PFEVSLEDDA 60 VQRSRQLREL YDALVSEQLV GSSPAPVGLS PEDLTEVEWF YLVSVSFSFS SGEGLPGKAF 120 ERQRHVWLTR ANEGNRKDLC RAILCKTLVC IPILDGVLEF GTTEKVEEDL SVIQQAKSLF 180 KENENDKPTL SEQSTSSPVN NSMFGFRHLV NAAPMNVDAQ QGGTDEEEEE DDDDDVEDEG 240 DIGYLVMSED VGSDNSNSVS ECAQPSDDEC SETISSLPQN NLIETAKSMS VGSLVHSKNS 300 AFTEWGSHNG NHFLSFFSRR TSQRMLKFML FKVPDLHCAS IQDSFQEELS TNHVLAERRR 360 REKINKRFIV LRSIVPFVTK MDKTSILEST IEYLERLQRQ IEELKSRKEK MGINLQTMNT 420 ETSKVETPCS TNVKVSIIEA NALFKLQCPY KDGLLFKIMQ KLHELGLETT SIQSSTVNKI 480 FVAELRAKV

Sequence ? help Back to Top

Protein Sequence Length: 489 aa Download sequence

MQLQHSLQLS VQSINWTYSI FWQLNPQNQV LEWKDGYYNG IIKSRKTVLG PFEVSLEDDA  60
VQRSRQLREL YDALVSEQLV GSSPAPVGLS PEDLTEVEWF YLVSVSFSFS SGEGLPGKAF  120
ERQRHVWLTR ANEGNRKDLC RAILCKTLVC IPILDGVLEF GTTEKVEEDL SVIQQAKSLF  180
KENENDKPTL SEQSTSSPVN NSMFGFRHLV NAAPMNVDAQ QGGTDEEEEE DDDDDVEDEG  240
DIGYLVMSED VGSDNSNSVS ECAQPSDDEC SETISSLPQN NLIETAKSMS VGSLVHSKNS  300
AFTEWGSHNG NHFLSFFSRR TSQRMLKFML FKVPDLHCAS IQDSFQEELS TNHVLAERRR  360
REKINKRFIV LRSIVPFVTK MDKTSILEST IEYLERLQRQ IEELKSRKEK MGINLQTMNT  420
ETSKVETPCS TNVKVSIIEA NALFKLQCPY KDGLLFKIMQ KLHELGLETT SIQSSTVNKI  480
FVAELRAKV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	357	362	ERRRRE
2	358	363	RRRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09820.1	7e-59	bHLH family protein

Link Out ? help Back to Top
Ensembl	Dr15177.1