PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Dr15031.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
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Family | LSD | ||||||||
Protein Properties | Length: 151aa MW: 15752.4 Da PI: 8.0712 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 37.5 | 3.9e-12 | 28 | 52 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL YP GA+sV+Ca+C V Dr15031.1 28 CSGCRNLLLYPVGATSVCCAVCSVV 52 **********************887 PP | |||||||
2 | zf-LSD1 | 46.7 | 5.1e-15 | 67 | 91 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y rGA+sV+C++C+tV Dr15031.1 67 CGGCHTLLMYIRGATSVQCSCCHTV 91 ************************9 PP | |||||||
3 | zf-LSD1 | 41.8 | 1.8e-13 | 112 | 136 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL+Y +GA+sV+Ca+C++V Dr15031.1 112 CGNCRMLLMYQYGARSVKCAVCNFV 136 ***********************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 151 aa Download sequence |
MPVPLAPYPT PPVPFTPPNG TTQSQLVCSG CRNLLLYPVG ATSVCCAVCS VVTNVPPPGT 60 EMAQLVCGGC HTLLMYIRGA TSVQCSCCHT VNLALEVRTA QIAANQVAHV NCGNCRMLLM 120 YQYGARSVKC AVCNFVTSVG ASPSSEQKLS G |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.1 | 4e-63 | LSD family protein |
Link Out ? help Back to Top | |
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Ensembl | Dr15031.1 |