PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr14543.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family AP2
Protein Properties Length: 350aa    MW: 39734.7 Da    PI: 9.6262
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr14543.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.32.9e-16127178155
        AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  Dr14543.1 127 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 178
                89****99**********99966...3.6*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    
MAKPQKNNLS ASTYSNNNSI TTTTMNNINN TNNALKVKRT RKSVPRDSPS QRSSIFRGVT  60
RHRWTGRYEA HLWDKNCWNE SQNKKGRQGF DFLSTYQEEL KEMEGQSKEE YIGSLRRKSS  120
GFSRGVSKYR GVARHHHNGR WEARIGRVFG NKYLYLGTYA TQEEAATAYD MAAIEYRGLN  180
AVTNFDLSRY IKWLRPNPEN SNPNLISXPN PNPNPNFNSI IQKVSPSDHH QHADEQVQSS  240
HPHNQQSSVE TSVTPQSKTL TNTTSSALGL LLQSSKFKEM LERTSSATEV PTMLPLKFNN  300
RSSKCSFPDD IQTYFEGGNF IEGDDAIFGD INTFTSNPIF QCELDTLANH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.14e-81AP2 family protein