PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr14041.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

MYB

Protein Properties

Length: 306aa MW: 34785.7 Da PI: 8.8119

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr14041.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.3	1.1e-15	17	64	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd l+++vk++G g+W+++ ++ + R++k+c++rw ++l Dr14041.1 17 KGPWTREEDVVLAEYVKKHGEGNWNAVQHHTKLPRCGKSCRLRWSNHL 64 79****************************99*********996 PP
2	Myb_DNA-binding	41.9	2.3e-13	71	113	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++T +E+ l++ +++++G++ W++ a ++ gRt++++k++w++ Dr14041.1 71 CPFTLDEENLIILLHARFGNK-WARMATQLP-GRTDNEIKNYWNT 113 689****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence
MKEITRGNEE RDQGLRKGPW TREEDVVLAE YVKKHGEGNW NAVQHHTKLP RCGKSCRLRW 60 SNHLRPNLKK CPFTLDEENL IILLHARFGN KWARMATQLP GRTDNEIKNY WNTRVKRLRR 120 AGLPLYPPEI LQSLSPPPMR FPEGLSCGEE VCVNEISLGD YGRGEFLYGG LQNHGDWNSC 180 ALFDQPNVQG AAVTGPGAQI EIRNDAGMGV RNPMQQAMAQ IIQTNPLQQS MTPMMQTNPV 240 QQSMTPMMQT NLXQQSMTVP MMRTNSLMTF PPVITKVDNS MNKPASIDQL LNVSWENLPG 300 LFQHFM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32460.1	5e-63	MYB family protein

Link Out ? help Back to Top
Ensembl	Dr14041.1