PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr13930.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

AP2

Protein Properties

Length: 571aa MW: 61757.9 Da PI: 6.7979

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr13930.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	30.7	8e-10	182	234	1	51
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaark 51 s y+GV++++++gr++A+++d + ++ k + g ++ +++Aa+a++ a++ Dr13930.1 182 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQTrKGRQ-GGYDKEDKAARAYDLAAL 234 57*****************4444.2455535555.7799999*******97 PP
2	AP2	47	6.1e-15	242	293	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g Dr13930.1 242 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 293 57**************988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 571 aa Download sequence
MVVGSKNNTG LEDEEPKLED FLGGHSFTHH QHQHQQQHHD HGGSCVNDYM FNNSSLGHDQ 60 LPNSNLPSNN AVNDDDPGSG GGGGGDGTST TNHTSSIGLS MIKTWLRNQP SPASTSVPQP 120 VNTASSQSLS LSMSTAGGEC SSSSENKQKT SVNGSAVVDA QSGASTDAVP RKSIDTFGQR 180 TSIYRGVTRH RWTGRYEAHL WDNSCRREGQ TRKGRQGGYD KEDKAARAYD LAALNGFSRG 240 ASIYRGVTRH HQHGRWQARI GRVAGNKDLY LGTFSTQEEA AEAYDIAAIK FRGLNAVTNF 300 DMSRYDVKSI MESNTLPIGG AAKRLKEVTE HGEASIDGRR IEDVTISQLT GGMTSYASHY 360 HHHGWPSIAF QNTQAMSVYN PNPNPNPNPN PNYVQQRGGW CKQEQPVITH SLHDLHQLQL 420 GNNTHNFFQT PATTMHGFVN GDSPSMEHST GSNSVYYGAG NGSYNGLVLP VNSTVVVDQN 480 PSGFTEDEVK PLGFDGMMAI GDPYNNNNNN NNNASRSSNL YGYEQSSGNG SNNMAWMQAA 540 VQNGNASSFR ANTNNVGVCH GGAVFSVWND T

Sequence ? help Back to Top

Protein Sequence Length: 571 aa Download sequence

MVVGSKNNTG LEDEEPKLED FLGGHSFTHH QHQHQQQHHD HGGSCVNDYM FNNSSLGHDQ  60
LPNSNLPSNN AVNDDDPGSG GGGGGDGTST TNHTSSIGLS MIKTWLRNQP SPASTSVPQP  120
VNTASSQSLS LSMSTAGGEC SSSSENKQKT SVNGSAVVDA QSGASTDAVP RKSIDTFGQR  180
TSIYRGVTRH RWTGRYEAHL WDNSCRREGQ TRKGRQGGYD KEDKAARAYD LAALNGFSRG  240
ASIYRGVTRH HQHGRWQARI GRVAGNKDLY LGTFSTQEEA AEAYDIAAIK FRGLNAVTNF  300
DMSRYDVKSI MESNTLPIGG AAKRLKEVTE HGEASIDGRR IEDVTISQLT GGMTSYASHY  360
HHHGWPSIAF QNTQAMSVYN PNPNPNPNPN PNYVQQRGGW CKQEQPVITH SLHDLHQLQL  420
GNNTHNFFQT PATTMHGFVN GDSPSMEHST GSNSVYYGAG NGSYNGLVLP VNSTVVVDQN  480
PSGFTEDEVK PLGFDGMMAI GDPYNNNNNN NNNASRSSNL YGYEQSSGNG SNNMAWMQAA  540
VQNGNASSFR ANTNNVGVCH GGAVFSVWND T

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51190.1	7e-91	AP2 family protein

Link Out ? help Back to Top
Ensembl	Dr13930.1