PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr13663.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

CO-like

Protein Properties

Length: 663aa MW: 72508.8 Da PI: 7.7299

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr13663.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	17.7	7.6e-06	247	278	4	35
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHk 35 + C+ ++e++ +C+++ +lC +C + H+ Dr13663.1 247 PLCDFCGEQRSMVYCRSDAACLCLSCDRNVHS 278 78**************************9995 PP
2	zf-B_box	22.1	3.1e-07	291	333	5	41
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 +C++++ +++ C + ++ lC++C ++H g H++++ Dr13663.1 291 VCDRCSAQPALVRCIEESVSLCQNCDWTGHGGsasasgHKRQT 333 8*****************************6699999999876 PP
3	CCT	65.7	1.3e-22	606	649	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R+ a+lRYkeK+ktRkFeKkirYesRKa+A+ R+RvKGrFvk+ Dr13663.1 606 RDSAVLRYKEKKKTRKFEKKIRYESRKARADIRKRVKGRFVKAG 649 899**************************************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 663 aa Download sequence
MVSRGGAPQA LLRYAQLSLT RSISSTPRLD GIGWIDKIKG VITGKPAADS ANPSFSLIEF 60 ADQMDKARKL GMLKKFQVGR CSEATVSDAF KKQSSILRYL GGIDPSGQNI QLSHKQDAMK 120 HCGCTMSEVE HILAKYTWAK EAQQKIENLQ KEGKPIPKSF NEVQKLMGST PLDVARSNLA 180 KNGQISRNAL CPCKSGKKYK RVSPLKAKAR GIELQGTVTR LLALLADPFQ PVLCVKVVEE 240 RRSRMSPLCD FCGEQRSMVY CRSDAACLCL SCDRNVHSAN ALSRRHWRTL VCDRCSAQPA 300 LVRCIEESVS LCQNCDWTGH GGSASASGHK RQTINCYSGC PSASELSRIW SFVLEIPPIA 360 ESSCEQGMGM MSINENSVSD NWRPHAENSS GADIPCDSMA NNVENDDNNF GAWLASTSTS 420 DVHPMSCSGD QPACSVDSTA PKLCFSDTKD LGISKNESFY DDFSVDDVDL TFENYEELFG 480 VSHNPTEQLF EDAGIESFFE TKETSAANSN CQVNPAAEAR TIQGTCSNNP LSVDSAMSNP 540 GTKADSNLCF PAKEGRPALS LSFSGLTGES SAGDYQDCGM SPALLMGEPP WYPPGLESSS 600 FSPASRDSAV LRYKEKKKTR KFEKKIRYES RKARADIRKR VKGRFVKAGD AYDYDPLCQT 660 RSC

Sequence ? help Back to Top

Protein Sequence Length: 663 aa Download sequence

MVSRGGAPQA LLRYAQLSLT RSISSTPRLD GIGWIDKIKG VITGKPAADS ANPSFSLIEF  60
ADQMDKARKL GMLKKFQVGR CSEATVSDAF KKQSSILRYL GGIDPSGQNI QLSHKQDAMK  120
HCGCTMSEVE HILAKYTWAK EAQQKIENLQ KEGKPIPKSF NEVQKLMGST PLDVARSNLA  180
KNGQISRNAL CPCKSGKKYK RVSPLKAKAR GIELQGTVTR LLALLADPFQ PVLCVKVVEE  240
RRSRMSPLCD FCGEQRSMVY CRSDAACLCL SCDRNVHSAN ALSRRHWRTL VCDRCSAQPA  300
LVRCIEESVS LCQNCDWTGH GGSASASGHK RQTINCYSGC PSASELSRIW SFVLEIPPIA  360
ESSCEQGMGM MSINENSVSD NWRPHAENSS GADIPCDSMA NNVENDDNNF GAWLASTSTS  420
DVHPMSCSGD QPACSVDSTA PKLCFSDTKD LGISKNESFY DDFSVDDVDL TFENYEELFG  480
VSHNPTEQLF EDAGIESFFE TKETSAANSN CQVNPAAEAR TIQGTCSNNP LSVDSAMSNP  540
GTKADSNLCF PAKEGRPALS LSFSGLTGES SAGDYQDCGM SPALLMGEPP WYPPGLESSS  600
FSPASRDSAV LRYKEKKKTR KFEKKIRYES RKARADIRKR VKGRFVKAGD AYDYDPLCQT  660
RSC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07650.2	1e-109	CO-like family protein

Link Out ? help Back to Top
Ensembl	Dr13663.1