PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr13598.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

CO-like

Protein Properties

Length: 278aa MW: 30942.8 Da PI: 7.3142

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr13598.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	25	3.9e-08	17	57	4	38
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Ht 38 r C+++ ++ l+C+ ++ +lC C + H g H+ Dr13598.1 17 RPCDTCRTVPAVLYCRADKAFLCTACDTRVH-GantvasrHE 57 78***************************99.5456666665 PP
2	zf-B_box	25.2	3.4e-08	59	104	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e+ +++ C+ + lC +C +H++ H+++pl Dr13598.1 59 VWVCEVCEQAPASVTCKADAATLCITCDADIHSNnqlsrrHERQPL 104 689*****************************88899999998876 PP
3	CCT	69.9	6.4e-24	212	255	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKrk+R+FeK+irY+sRKa+Ae+RpR+KGrF+k++ Dr13598.1 212 REARVMRYREKRKSRRFEKTIRYASRKAYAETRPRIKGRFAKRT 255 9*****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence
MARELEERSG YWGLTARPCD TCRTVPAVLY CRADKAFLCT ACDTRVHGAN TVASRHERVW 60 VCEVCEQAPA SVTCKADAAT LCITCDADIH SNNQLSRRHE RQPLLPFYET PSKPTPPLAD 120 DPSWLFSTPK SPDLKSSEFY FQDSDPYLDL DFAGSIHQTD SIVPAPAPAP INLSFSTYTD 180 SQSGEAGVVP EAVTEVSGGG DGGRGLVAKM EREARVMRYR EKRKSRRFEK TIRYASRKAY 240 AETRPRIKGR FAKRTDVAEP VPDPVYFFDP SYGVVPSF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57660.1	1e-77	CO-like family protein

Link Out ? help Back to Top
Ensembl	Dr13598.1