PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr13529.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

TALE

Protein Properties

Length: 394aa MW: 43247.5 Da PI: 6.019

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr13529.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	22.9	1.5e-07	342	375	21	54
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp+++++++L +++gL+ +q+ +WF N+R + Dr13529.1 342 KWPYPTEDDKARLVQETGLQLKQINNWFINQRKR 375 569*****************************87 PP
2	ELK	28.9	2.5e-10	296	317	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELKh+L+++Y+++++++++E++ Dr13529.1 296 ELKHELKQGYKEKIVDIREEIL 317 9*******************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 394 aa Download sequence
MAFQMPPLSH YDHHLPPPPD PSAAGEQKIS GPGQQPPTWL NNAIQRQQFV DGSFLHLQTT 60 SESSASPVAA AGKWMSRVGM VNRSGSEDEV PVSSDSMIAA EISHGSAGAG GEGGMGVGDG 120 GDGWQSARFK AEILAHPLYE QLLSAHVSCL RIATPVDQLP RIDAQLAQSQ NVVAKYSMLG 180 PGAGSQMLGD DKELDQFMTH YVLLLCSFKE QLQQHVRVHA MEAVMACWEL EQSLQSLTGV 240 SPGEGTGATM SDDDDDHADS ETNLFDGSLD GPDSMGFGPL VPSETERSLM ERVRLELKHE 300 LKQGYKEKIV DIREEILRKR RAGKLPGDTT STLKAWWQSH AKWPYPTEDD KARLVQETGL 360 QLKQINNWFI NQRKRNWHSN PSSSGTLKSK RKSK

Sequence ? help Back to Top

Protein Sequence Length: 394 aa Download sequence

MAFQMPPLSH YDHHLPPPPD PSAAGEQKIS GPGQQPPTWL NNAIQRQQFV DGSFLHLQTT  60
SESSASPVAA AGKWMSRVGM VNRSGSEDEV PVSSDSMIAA EISHGSAGAG GEGGMGVGDG  120
GDGWQSARFK AEILAHPLYE QLLSAHVSCL RIATPVDQLP RIDAQLAQSQ NVVAKYSMLG  180
PGAGSQMLGD DKELDQFMTH YVLLLCSFKE QLQQHVRVHA MEAVMACWEL EQSLQSLTGV  240
SPGEGTGATM SDDDDDHADS ETNLFDGSLD GPDSMGFGPL VPSETERSLM ERVRLELKHE  300
LKQGYKEKIV DIREEILRKR RAGKLPGDTT STLKAWWQSH AKWPYPTEDD KARLVQETGL  360
QLKQINNWFI NQRKRNWHSN PSSSGTLKSK RKSK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G25220.1	1e-172	TALE family protein

Link Out ? help Back to Top
Ensembl	Dr13529.1