PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr13382.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

MYB

Protein Properties

Length: 796aa MW: 88869.9 Da PI: 8.9587

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr13382.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.9	4.8e-18	200	246	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT eEd++l+ av+++ g++Wk+Ia++++ Rt+ qc +rwqk+l Dr13382.1 200 KGGWTDEEDDILATAVRRFNGKNWKKIAEYVP-DRTDVQCLHRWQKVL 246 688***************************.**********986 PP
2	Myb_DNA-binding	56.7	5.4e-18	252	298	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W +eEd+ ++++v+++G++ W++Ia+ m+ gR +kqc++rw+++l Dr13382.1 252 KGAWAKEEDDCIIKLVNKYGPKKWSLIAQSMP-GRIGKQCRERWHNHL 298 799***************************.***********97 PP
3	Myb_DNA-binding	49.1	1.3e-15	304	346	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +++WTteE+ l++a++++G++ W+ a+ ++ gR ++++k++w+ Dr13382.1 304 KDAWTTEEETVLIHAHQLYGNK-WAEMAKLLP-GRADNSIKNHWN 346 679*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 796 aa Download sequence
MLLLIVDRLV PIGVGGMPHK LAQSDCCHGL IFCFLPTYAA PNQAKPLRRK YLQSTVARRV 60 KPSFYVNLVS ETKQNTHPRI QTIPLSLSLS LSLSLVAPTL VSLAFSRGLV AIGAPRSNPL 120 SSRRRLGDRC RCFVSPALAP SPLILIGVAV FEEVKKEHGK GEKVQGVVXT SWFPASDGSF 180 EMKASALPGX GAGRTRRSTK GGWTDEEDDI LATAVRRFNG KNWKKIAEYV PDRTDVQCLH 240 RWQKVLNPDL VKGAWAKEED DCIIKLVNKY GPKKWSLIAQ SMPGRIGKQC RERWHNHLNP 300 AIKKDAWTTE EETVLIHAHQ LYGNKWAEMA KLLPGRADNS IKNHWNCSLK KRLPSILASG 360 ILDQTPGLAS LDLNGHLPTX ECQPVKPSQQ QIKQFDRKRT INKSLVTPEA CLDDQDLSLG 420 FQDFGLQSIE NSIAVGPENR EITIEDSKRL KIEVEEIPLD DPKCIQIEAI NFAKHLQCGG 480 DKGPASYPNS FLYKDASPCR TDLLPHVTNL WRIEDSNHSG AADDSHVASV LQPKAQNFIS 540 NPFFSHSEFD RSFSNKMLES PKKLWRCEFV IKDENKKYKD KNISQTPTTV LSSYDKFCGG 600 DQIIRTPVSL DNSTFCPLYC APLQLAGNEI SLVNSRKSDT DVHTKQKCSP VQCSTPSNLS 660 LSLACVPTTP ESILRSAAKT FKNIPSIMRK RGRESSKVLF PKNSPQARCE ATKTDGSGDS 720 SRRVANIEND KDNECVSHHY QRKNLFDLNK SDMLNGEPLL SYSSEQPLKS KHFSTTKCIE 780 KKLEMGFDLE WDACSL

Sequence ? help Back to Top

Protein Sequence Length: 796 aa Download sequence

MLLLIVDRLV PIGVGGMPHK LAQSDCCHGL IFCFLPTYAA PNQAKPLRRK YLQSTVARRV  60
KPSFYVNLVS ETKQNTHPRI QTIPLSLSLS LSLSLVAPTL VSLAFSRGLV AIGAPRSNPL  120
SSRRRLGDRC RCFVSPALAP SPLILIGVAV FEEVKKEHGK GEKVQGVVXT SWFPASDGSF  180
EMKASALPGX GAGRTRRSTK GGWTDEEDDI LATAVRRFNG KNWKKIAEYV PDRTDVQCLH  240
RWQKVLNPDL VKGAWAKEED DCIIKLVNKY GPKKWSLIAQ SMPGRIGKQC RERWHNHLNP  300
AIKKDAWTTE EETVLIHAHQ LYGNKWAEMA KLLPGRADNS IKNHWNCSLK KRLPSILASG  360
ILDQTPGLAS LDLNGHLPTX ECQPVKPSQQ QIKQFDRKRT INKSLVTPEA CLDDQDLSLG  420
FQDFGLQSIE NSIAVGPENR EITIEDSKRL KIEVEEIPLD DPKCIQIEAI NFAKHLQCGG  480
DKGPASYPNS FLYKDASPCR TDLLPHVTNL WRIEDSNHSG AADDSHVASV LQPKAQNFIS  540
NPFFSHSEFD RSFSNKMLES PKKLWRCEFV IKDENKKYKD KNISQTPTTV LSSYDKFCGG  600
DQIIRTPVSL DNSTFCPLYC APLQLAGNEI SLVNSRKSDT DVHTKQKCSP VQCSTPSNLS  660
LSLACVPTTP ESILRSAAKT FKNIPSIMRK RGRESSKVLF PKNSPQARCE ATKTDGSGDS  720
SRRVANIEND KDNECVSHHY QRKNLFDLNK SDMLNGEPLL SYSSEQPLKS KHFSTTKCIE  780
KKLEMGFDLE WDACSL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32730.1	1e-86	MYB family protein

Link Out ? help Back to Top
Ensembl	Dr13382.1