PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr12910.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

SBP

Protein Properties

Length: 878aa MW: 96451 Da PI: 7.7139

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr12910.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	47.1	6.3e-15	3	34	47	78
SSEEETTT--SS--S-STTTT-------S--- CS SBP 47 srfhelsefDeekrsCrrrLakhnerrrkkqa 78 rfh lsefDe+krsCrrrLa+hn+rrrk+q+ Dr12910.1 3 XRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQP 34 59***************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 878 aa Download sequence
MSXRFHPLSE FDEGKRSCRR RLAGHNRRRR KTQPEDASSR LLLPGSQENG TKPGVDLVNL 60 LXILTRLQGT NAAKLANVSP LPDKNQLVQI ISKLNALPHP NSAAKLPVPE RFDLNVAQAS 120 PQVPSEPPPR IXGNPSASST MDLLAVLSAA LAGSAPHALA SLSQGSNDNK AKIRCADSSS 180 DVVSQNNLLQ MLPPAGQGMS SSAAKSTLEV CKPPAQEARS NLTFQLFNSV EDDSPPKFAS 240 SRKYLSSESS NPMEERSPSS SPPVAQKLFP LHPAAEGMKN KRMVGSRDDS MALEASTSYG 300 CTAPLELFKD PERRVENGAV HSHLYHPSCT SSSGSDHSPS SSNXDAQDRT DRIIFKLFDK 360 DPGALPGTLR GEILNWLSSS PSEMESYIRP GCVVLSVYVS MPSVAWDELE DDLHHRVNSL 420 IQCSGNEFWR KGRFLVRTSR QLVSHKDGKI HLSKSWKAWS APELISVSPV AIVGGQEASL 480 VLRGRNLTVP GTKIHCTYMG GYTSKEVLGS AYPGTIYDDS SSESFSFPGG SPNTFGRCFI 540 EVENGFKGNS FPIIIADATI CQELRGLESE IEDQIGMTDL ILEDPLQDHG RPRSRDDVLH 600 FLNELGWLFQ RTNRLSISPF ENFSSTRFKF LLTFSVDRDL CALMRKILDI LAERSLKSQS 660 LVQESLNMLS EVQLLSRAVK RKCXRMINLL LHYSVTGGID ASKLYPFLPN MSGPGGLTPL 720 HLAACTQDSD EIVDALTNDP QQIGLNCWNS IQDDNGQTPF SYASMRSYHS YNTLVTRKLE 780 DWKNGQVSIT VQTEDTTGET KQCNARPLYA RSCAQCASID VGRIRPTVRS RGLLQRPYVH 840 SMLAIAAVCV CVCLFFRGSP DLGCVAPFKW ENLDYGPR

Sequence ? help Back to Top

Protein Sequence Length: 878 aa Download sequence

MSXRFHPLSE FDEGKRSCRR RLAGHNRRRR KTQPEDASSR LLLPGSQENG TKPGVDLVNL  60
LXILTRLQGT NAAKLANVSP LPDKNQLVQI ISKLNALPHP NSAAKLPVPE RFDLNVAQAS  120
PQVPSEPPPR IXGNPSASST MDLLAVLSAA LAGSAPHALA SLSQGSNDNK AKIRCADSSS  180
DVVSQNNLLQ MLPPAGQGMS SSAAKSTLEV CKPPAQEARS NLTFQLFNSV EDDSPPKFAS  240
SRKYLSSESS NPMEERSPSS SPPVAQKLFP LHPAAEGMKN KRMVGSRDDS MALEASTSYG  300
CTAPLELFKD PERRVENGAV HSHLYHPSCT SSSGSDHSPS SSNXDAQDRT DRIIFKLFDK  360
DPGALPGTLR GEILNWLSSS PSEMESYIRP GCVVLSVYVS MPSVAWDELE DDLHHRVNSL  420
IQCSGNEFWR KGRFLVRTSR QLVSHKDGKI HLSKSWKAWS APELISVSPV AIVGGQEASL  480
VLRGRNLTVP GTKIHCTYMG GYTSKEVLGS AYPGTIYDDS SSESFSFPGG SPNTFGRCFI  540
EVENGFKGNS FPIIIADATI CQELRGLESE IEDQIGMTDL ILEDPLQDHG RPRSRDDVLH  600
FLNELGWLFQ RTNRLSISPF ENFSSTRFKF LLTFSVDRDL CALMRKILDI LAERSLKSQS  660
LVQESLNMLS EVQLLSRAVK RKCXRMINLL LHYSVTGGID ASKLYPFLPN MSGPGGLTPL  720
HLAACTQDSD EIVDALTNDP QQIGLNCWNS IQDDNGQTPF SYASMRSYHS YNTLVTRKLE  780
DWKNGQVSIT VQTEDTTGET KQCNARPLYA RSCAQCASID VGRIRPTVRS RGLLQRPYVH  840
SMLAIAAVCV CVCLFFRGSP DLGCVAPFKW ENLDYGPR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76580.1	0.0	SBP family protein

Link Out ? help Back to Top
Ensembl	Dr12910.1