PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr11878.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

HSF

Protein Properties

Length: 510aa MW: 56422.8 Da PI: 5.1412

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr11878.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	101.5	7.6e-32	25	141	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT...............XTTSEEEEE CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks...............kekiweFkh 83 Fl+k+y++++d++++ ++sw +nsfvv+++ efa+++LpkyFkh+nf+SFvRQLn+Y ++ +++ + + +++ weF++ Dr11878.1 25 FLSKTYDMVDDPATDAVVSWGPGNNSFVVWNTPEFARDLLPKYFKHNNFSSFVRQLNTYVRHRKTSSLFRFRLkdlvfrvvecgfrkvDPDRWEFAN 121 9*******************99*******************************8776666554433358888888777765449*** PP SXXXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 84 ksFkkgkkellekikrkkse 103 + F +g+k+ll++i+r+k + Dr11878.1 122 EGFLRGQKHLLKTINRRKPS 141 ***************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 510 aa Download sequence
MEGGGGGAAV GGPNAGLVAG GPPPFLSKTY DMVDDPATDA VVSWGPGNNS FVVWNTPEFA 60 RDLLPKYFKH NNFSSFVRQL NTYVRHRKTS SLFRFRLKDL VFRVVECGFR KVDPDRWEFA 120 NEGFLRGQKH LLKTINRRKP SHLHSQPQQP QTQNTPVTSC VEVGKFGLEG EIERLKRDKA 180 VLMKELVMLR QQQQTTDHQL QTLGQRLQGM EQRQQQMMSF LAKAIQSPGF LAQFVQQNDS 240 NRRISEGNKK RRLPKQEEKM DGERSSPSGQ IIKYQPLMNE AAKAMLMQIL KMDSTPLMET 300 MGDSSGFLIK NYSPSMDSMD ASPSNRNSGV TLSEMPTSTG VPYMPVSSGF SVPAQIQGSA 360 GMSGMVATTE MPDTSMLPPM PEGVAPGRTD MNIPEFSPLQ GIVSGSNISN VPGTNSLYMN 420 PASIGLDGEE DIDDSGIDIF DEEQKLPDIN DSFWEQFLSV SPISRDTAEI DSDMLQAKDA 480 LPEVENVWDS ARNMAHLTEQ LGLLTSESKV

Sequence ? help Back to Top

Protein Sequence Length: 510 aa Download sequence

MEGGGGGAAV GGPNAGLVAG GPPPFLSKTY DMVDDPATDA VVSWGPGNNS FVVWNTPEFA  60
RDLLPKYFKH NNFSSFVRQL NTYVRHRKTS SLFRFRLKDL VFRVVECGFR KVDPDRWEFA  120
NEGFLRGQKH LLKTINRRKP SHLHSQPQQP QTQNTPVTSC VEVGKFGLEG EIERLKRDKA  180
VLMKELVMLR QQQQTTDHQL QTLGQRLQGM EQRQQQMMSF LAKAIQSPGF LAQFVQQNDS  240
NRRISEGNKK RRLPKQEEKM DGERSSPSGQ IIKYQPLMNE AAKAMLMQIL KMDSTPLMET  300
MGDSSGFLIK NYSPSMDSMD ASPSNRNSGV TLSEMPTSTG VPYMPVSSGF SVPAQIQGSA  360
GMSGMVATTE MPDTSMLPPM PEGVAPGRTD MNIPEFSPLQ GIVSGSNISN VPGTNSLYMN  420
PASIGLDGEE DIDDSGIDIF DEEQKLPDIN DSFWEQFLSV SPISRDTAEI DSDMLQAKDA  480
LPEVENVWDS ARNMAHLTEQ LGLLTSESKV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16820.2	1e-104	HSF family protein

Link Out ? help Back to Top
Ensembl	Dr11878.1