PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr11842.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

FAR1

Protein Properties

Length: 398aa MW: 44224.2 Da PI: 10.0031

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr11842.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	45.9	1.9e-14	84	160	2	86
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 fY++Y +++GF++ +sk ++s++++++ +r+fvCskeg+re + kk e+++++ra+tr+gCk kw++t++ +eHn Dr11842.1 84 FYSAYTRRIGFHTHISKYSRSRHDNSVESRRFVCSKEGFREVRVKKdvyGEHRQQQRAVTRVGCK-----------KWVITRFTKEHN 160 9****************************************999888899999*******7...........566666666666 PP
2	FAR1	52.8	1.3e-16	158	235	16	89
FAR1 16 kskskkskrngeitkrtfvCskegkreeekkk....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++ k+s+ +++i++r+ vCskeg+re + +k + k rr++a tr+gCk ++ vkk ++++w+vt++++eHn +l Dr11842.1 158 EHNRKRSRCDNSIISRQIVCSKEGFREVRITKdivnEGKVRRPTAITRIGCKVMIAVKKLTSANWVVTRFVKEHNFAL 235 44566779999***************9999999889999********************************887 PP

Sequence ? help Back to Top
Protein Sequence Length: 398 aa Download sequence
MGSRTLNPLS EINMEKEQSQ LPFGVKDHKL EACMVSMEVD PSTHDINKKL VVSNGRELIA 60 SESDEILEPC EGIEFDFEEA ARTFYSAYTR RIGFHTHISK YSRSRHDNSV ESRRFVCSKE 120 GFREVRVKKD VYGEHRQQQR AVTRVGCKKW VITRFTKEHN RKRSRCDNSI ISRQIVCSKE 180 GFREVRITKD IVNEGKVRRP TAITRIGCKV MIAVKKLTSA NWVVTRFVKE HNFALGTSKN 240 LVHLQSDIST RKSLALPEAS AVCTGVDTGG CSEMQVTESS PLKSPCTLVT TPIGSSRDSP 300 YNSAAFTQSI AAHQPEPAIH SGAQSLATSS GNISGPNPQV HATALSVRAG ILPPTTAASL 360 IKAVESRIRS PDASLTISVH TDYNTKQLTT LHRKFQNR

Sequence ? help Back to Top

Protein Sequence Length: 398 aa Download sequence

MGSRTLNPLS EINMEKEQSQ LPFGVKDHKL EACMVSMEVD PSTHDINKKL VVSNGRELIA  60
SESDEILEPC EGIEFDFEEA ARTFYSAYTR RIGFHTHISK YSRSRHDNSV ESRRFVCSKE  120
GFREVRVKKD VYGEHRQQQR AVTRVGCKKW VITRFTKEHN RKRSRCDNSI ISRQIVCSKE  180
GFREVRITKD IVNEGKVRRP TAITRIGCKV MIAVKKLTSA NWVVTRFVKE HNFALGTSKN  240
LVHLQSDIST RKSLALPEAS AVCTGVDTGG CSEMQVTESS PLKSPCTLVT TPIGSSRDSP  300
YNSAAFTQSI AAHQPEPAIH SGAQSLATSS GNISGPNPQV HATALSVRAG ILPPTTAASL  360
IKAVESRIRS PDASLTISVH TDYNTKQLTT LHRKFQNR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	7e-22	FAR1 family protein

Link Out ? help Back to Top
Ensembl	Dr11842.1