PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr11284.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

SBP

Protein Properties

Length: 376aa MW: 42166.2 Da PI: 6.8234

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr11284.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	132.6	1.3e-41	97	173	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC++dls+++eyhrrhkvCevhsk+p+v+v g+eqrfCqqCsrfh l efDe krsCr+rL++hn+rrrk+q+ Dr11284.1 97 CLVDGCKSDLSNCREYHRRHKVCEVHSKTPMVMVGGQEQRFCQQCSRFHLLIEFDEVKRSCRKRLDGHNRRRRKPQP 173 **************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence
MEWDLKMPPW DMAELGRDSE PEIGSVATTK PDCSVDLKLG GLGDFEASDK WKELQQHHHQ 60 QQQEQEQQHQ QQQLRISMST PTKRARAMSN GSQNVSCLVD GCKSDLSNCR EYHRRHKVCE 120 VHSKTPMVMV GGQEQRFCQQ CSRFHLLIEF DEVKRSCRKR LDGHNRRRRK PQPDSTINPG 180 SMFANNRGTT SSRFLPYAQM FPTTSLEPNW ANTIKTEQNV VYVHPSSMHP IDRQQGFPVS 240 SSSSYEASKH FPFLPDTGPI LGSRTAIETS VCQPLLETML VTSENSSIKM FSSDGLTQVL 300 DSDCALSLLS SPTPGRIPMP YDTLGRYSSQ QDSSNISPTV LVSSAADTYL PCQNMFQVDG 360 TGSSVDTSNA LPFSWH

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence

MEWDLKMPPW DMAELGRDSE PEIGSVATTK PDCSVDLKLG GLGDFEASDK WKELQQHHHQ  60
QQQEQEQQHQ QQQLRISMST PTKRARAMSN GSQNVSCLVD GCKSDLSNCR EYHRRHKVCE  120
VHSKTPMVMV GGQEQRFCQQ CSRFHLLIEF DEVKRSCRKR LDGHNRRRRK PQPDSTINPG  180
SMFANNRGTT SSRFLPYAQM FPTTSLEPNW ANTIKTEQNV VYVHPSSMHP IDRQQGFPVS  240
SSSSYEASKH FPFLPDTGPI LGSRTAIETS VCQPLLETML VTSENSSIKM FSSDGLTQVL  300
DSDCALSLLS SPTPGRIPMP YDTLGRYSSQ QDSSNISPTV LVSSAADTYL PCQNMFQVDG  360
TGSSVDTSNA LPFSWH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	154	171	KRSCRKRLDGHNRRRRKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	1e-56	SBP family protein

Link Out ? help Back to Top
Ensembl	Dr11284.1