PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr10997.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

ARF

Protein Properties

Length: 1309aa MW: 141343 Da PI: 6.4475

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr10997.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	72.9	3.9e-23	115	216	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f k+lt+sd+++ g +++p+ +ae++ ++ + t+ +d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD++vF +++++ l+ Dr10997.1 115 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TVLAKDVHGEVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFL--RTENGDLC 210 89**************************996555555..8999******************************************..4588999 PP EEEE-S CS B3 94 vkvfrk 99 v+++r+ Dr10997.1 211 VGIRRA 216 ***996 PP
2	Auxin_resp	117.7	9.7e-39	285	368	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ a+++++FevvY+Prast+eF+vk+++v++a+++++s GmRfkmafetedss++++ +Gt+++v+ +dp+rWpnS+Wr+L+ Dr10997.1 285 AANLAASGQPFEVVYYPRASTPEFCVKAASVRAAMRIQWSSGMRFKMAFETEDSSRISWfMGTISSVHVADPIRWPNSPWRLLQ 368 7899******************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1309 aa Download sequence
MVKDSDKCLD SQLWHACAGG MVQMPSVNSK VYYFPQGHAE HAQGNTDFGS SSRIPAFIFC 60 RVAAVKFMAD PETDEVFAKI RLVPVRANEP DFGEDDGLAL GNHGTTELPE KPASFAKTLT 120 QSDANNGGGF SVPRYCAETI FPRLDYSADP PVQTVLAKDV HGEVWKFRHI YRGTPRRHLL 180 TTGWSTFVNQ KKLVAGDSIV FLRTENGDLC VGIRRAKRGM GGGPEPPSGW NPPSGNCVSS 240 YGAFSSFFRE EEGKFMRGNS NGGVTNMNGN LRSRGRVTAE SVVEAANLAA SGQPFEVVYY 300 PRASTPEFCV KAASVRAAMR IQWSSGMRFK MAFETEDSSR ISWFMGTISS VHVADPIRWP 360 NSPWRLLQVT WDEPDLLQNV KRVSPWLVEL VSNMPAIHLA PFSPPRKKLR IPQHPDFPLD 420 GQLPTPMFST NPLGPSSSPL CCFPDSTPAG IQGARHAQFG LSLSDLHLNK LQAGLLQAGY 480 RRLDHVAPAL RISSAGLSSG NPTIHDNVSC LLTIGNPSVS AKKSCDVKAP QLVLFGQPIL 540 TEEQLSLSSS GGAVSPGLTG NSLSDGNHEK AGNLSDGSGS AIHQHGPVDN SSCEGFPWYR 600 DQRATELGLD IGHCKVFMES EDVGRTLDLS ALGSYEELYG KLADMFGIEK SEMMSHVLYR 660 DSFGAVKHTG DEPFSEFMKT ARRLTILMDS GSDNIGSLNK PSRLNGKLPV LPLTIVFSAR 720 RVIPDLGAHP RLLLSKSHPR SRSPTPSPME GNVVPLAEGA HIPCFGLTVQ FVSAASAFEK 780 VDFQKLQNGS DIRGVAVAGV EGEPVSLTER VAEAIAAAFA AWLCDRKKSD GSRPLRVSIG 840 HDSRISAQTL QDAVSRGLAG AGFDVIQYGL ASTPAMFNST LTEDEDVFCP VDGSIMITAS 900 HLPYNRNGLK FFTNAGGLGK ADIKDILERA AIIYDNFSND ALKESELAVS AAVRKADYMN 960 IYTANLVEAV RRAAGNIEKP LEGFHIVVDA GNGAGGFFMG KVLEPLGAVT SGSQFLEPDG 1020 LFPNHIPNPE DKAAMRALTQ AVLENKADLG IIFDTDVDRS AAVDSSGREF NRNRLIALMS 1080 AIVLEEHPGT TIVTDSVTSD GLTAFIENKL GGKHHRFKRG YKNVIDEAIR LNFVGEESHL 1140 AIETSGHGAL KENHWLDDGA YLMVKVLNKL ASARVSGSGC GSKVLTDMVD GLEEAEVAVE 1200 LRLKIDQNHA DLKGGSFRDY GEAVLKHLEN MITSDSKLNR APVNYEGVRV SGHGGWFLLR 1260 LSLHDPVLPL NIEAPSLEEA VKLGLAVLAA VKEFAALDTS ALDKFVQGL

Sequence ? help Back to Top

Protein Sequence Length: 1309 aa Download sequence

MVKDSDKCLD SQLWHACAGG MVQMPSVNSK VYYFPQGHAE HAQGNTDFGS SSRIPAFIFC  60
RVAAVKFMAD PETDEVFAKI RLVPVRANEP DFGEDDGLAL GNHGTTELPE KPASFAKTLT  120
QSDANNGGGF SVPRYCAETI FPRLDYSADP PVQTVLAKDV HGEVWKFRHI YRGTPRRHLL  180
TTGWSTFVNQ KKLVAGDSIV FLRTENGDLC VGIRRAKRGM GGGPEPPSGW NPPSGNCVSS  240
YGAFSSFFRE EEGKFMRGNS NGGVTNMNGN LRSRGRVTAE SVVEAANLAA SGQPFEVVYY  300
PRASTPEFCV KAASVRAAMR IQWSSGMRFK MAFETEDSSR ISWFMGTISS VHVADPIRWP  360
NSPWRLLQVT WDEPDLLQNV KRVSPWLVEL VSNMPAIHLA PFSPPRKKLR IPQHPDFPLD  420
GQLPTPMFST NPLGPSSSPL CCFPDSTPAG IQGARHAQFG LSLSDLHLNK LQAGLLQAGY  480
RRLDHVAPAL RISSAGLSSG NPTIHDNVSC LLTIGNPSVS AKKSCDVKAP QLVLFGQPIL  540
TEEQLSLSSS GGAVSPGLTG NSLSDGNHEK AGNLSDGSGS AIHQHGPVDN SSCEGFPWYR  600
DQRATELGLD IGHCKVFMES EDVGRTLDLS ALGSYEELYG KLADMFGIEK SEMMSHVLYR  660
DSFGAVKHTG DEPFSEFMKT ARRLTILMDS GSDNIGSLNK PSRLNGKLPV LPLTIVFSAR  720
RVIPDLGAHP RLLLSKSHPR SRSPTPSPME GNVVPLAEGA HIPCFGLTVQ FVSAASAFEK  780
VDFQKLQNGS DIRGVAVAGV EGEPVSLTER VAEAIAAAFA AWLCDRKKSD GSRPLRVSIG  840
HDSRISAQTL QDAVSRGLAG AGFDVIQYGL ASTPAMFNST LTEDEDVFCP VDGSIMITAS  900
HLPYNRNGLK FFTNAGGLGK ADIKDILERA AIIYDNFSND ALKESELAVS AAVRKADYMN  960
IYTANLVEAV RRAAGNIEKP LEGFHIVVDA GNGAGGFFMG KVLEPLGAVT SGSQFLEPDG  1020
LFPNHIPNPE DKAAMRALTQ AVLENKADLG IIFDTDVDRS AAVDSSGREF NRNRLIALMS  1080
AIVLEEHPGT TIVTDSVTSD GLTAFIENKL GGKHHRFKRG YKNVIDEAIR LNFVGEESHL  1140
AIETSGHGAL KENHWLDDGA YLMVKVLNKL ASARVSGSGC GSKVLTDMVD GLEEAEVAVE  1200
LRLKIDQNHA DLKGGSFRDY GEAVLKHLEN MITSDSKLNR APVNYEGVRV SGHGGWFLLR  1260
LSLHDPVLPL NIEAPSLEEA VKLGLAVLAA VKEFAALDTS ALDKFVQGL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30080.1	0.0	ARF family protein

Link Out ? help Back to Top
Ensembl	Dr10997.1