PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr10083.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family C3H
Protein Properties Length: 690aa    MW: 76731.4 Da    PI: 6.8116
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr10083.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.81.5e-0695119526
                --SGGGGTS...--TTTTT-SS-SS CS
    zf-CCCH   5 lCrffartG...tCkyGdrCkFaHg 26 
                +C+  a+ G    C+yG++C+F+H+
  Dr10083.1  95 ICSEVAKLGkvdACRYGGKCRFSHD 119
                6899999999999***********7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 690 aa     Download sequence    
MNGGEPPVDT ATFEPSSENP ISLPEPQAAP PNPEELVAKA IAPVKAEFLR PPPSRSRSDG  60
AGEKNSVSSN VVKEKKSKRQ LKRERQQEQK SATHICSEVA KLGKVDACRY GGKCRFSHDL  120
DAYLAQKPAD LEGTCPFNIV KELCPYGLTC RFASTHSEGV SLEDENTPKK NFEINGLNKD  180
LQRLLWKNKV SFPKSSAQLK LLGLSGGYGS KTNSDANQEE SHPDSVNGSS NVQEHNDNDM  240
PCTSVSELES SSTVCMDKDP LNDESAIDDL RPSKKAKNPT DDKFNSSDIN GTGPVEKDSV  300
KLDDQLEEKQ NXSVCSVKVD SNLKPHAREK KLIDFRRKLY LAPLTTVGNL PFRRVCRALG  360
ADITCGEMAM CTNLLQGQAS EWALLRRHSS EEIFGVQICG SYPDTVARTV ELIDRECAVD  420
FIDINMGCPI DIVVNKGAGS SLLTKPMRMK GIIQAASGTV DKPITVKVRT GYFEGRNRID  480
SLISDIKAWG GTAVTIHGRS RQQRYSKLAD WDYINLCANK APDNLQVLGN GDIFSYHDWN  540
MHISDCSKLS SCMVGRGALI KPWIFTEIKE QRDWDISSTE RFDILKDFVR FGLQHWGSDN  600
KGVETTRHFM LEWLSYTCRY IPVGLLDVIP QRINWRLPSY YGRNDLETLM ASDSAADWIR  660
ISEMLLGKVP EGFSFAPKHK SNAYDRAENG