PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr10008.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

MYB_related

Protein Properties

Length: 760aa MW: 84752.2 Da PI: 6.1471

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr10008.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	31.6	3.8e-10	624	665	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rW++ E +l++++v+q+G++ ++ I + ++ +Rt+ q+k+++ + Dr10008.1 624 RWSKLETDLFYQGVRQFGTD-FAMIKQLFP-NRTRHQVKLKFKN 665 9*****************.*****.********987 PP

Sequence ? help Back to Top
Protein Sequence Length: 760 aa Download sequence
IELKKSLPSF HDFQNQNQNP RSKPAKSDLA SPLNARRCSI VLLFCRSPRG TILLHWRLGR 60 SWARAANGPS SGGALLAQAR LDYALVLVCF DVYFSLCVDS WCLLSMCIVC SSSREAMFGD 120 SDCLDDLFSS TSTANDEASI KFRPKQPLKM TKVISRPSVA TKPNPANLDP SIHSTDLNSG 180 SQVSHVRQEP VFPEKASHIE SQVIEIDVNL QTNPNHTEVE AAGMAFNTES FDELIPPTSS 240 IGFTEPLIGQ DHSPRSSPHR EISSEFDMAT ADVFGIADLV DVLLQPSVFT DRQLSKFQPK 300 RSQHSQPKAG KTKSVSFKIL VESDASHQIL ETNGQGGESI GMGTSLAQMT DGDSVEHDPQ 360 PLSAVSTCSA DIQVGKKSPH CGTGKCQNIS EEPSKVIESQ DAEDLIEQIL NGLPAWSTAE 420 DDGSSKSSRK LRKRTSTQSH SAEHDGRTSE DYNDDLSSVS QMDEDRSDNE YTMEDMSKQK 480 MGSKNLKKKT SESKKPVQRN RKASAKPDST FTRQEKHPVG TKRKRRLVDK TLLEKPENEI 540 DPKRISIKDL ILLAEAKEKI SSKEATASGR SIPKQRDANY PNKDQFDVDP FGDEQEGDED 600 NNSHHVNSRK LNYHSYLNKS QSTRWSKLET DLFYQGVRQF GTDFAMIKQL FPNRTRHQVK 660 LKFKNEERKK PLQIADALLH RSKDNSHFEL VIQQLQAQSK QGKEDESHEP SVASEDKCGD 720 EDTNQEVNKF DDELEGSFDW DDNASYSPGK VKDILGDLFS

Sequence ? help Back to Top

Protein Sequence Length: 760 aa Download sequence

IELKKSLPSF HDFQNQNQNP RSKPAKSDLA SPLNARRCSI VLLFCRSPRG TILLHWRLGR  60
SWARAANGPS SGGALLAQAR LDYALVLVCF DVYFSLCVDS WCLLSMCIVC SSSREAMFGD  120
SDCLDDLFSS TSTANDEASI KFRPKQPLKM TKVISRPSVA TKPNPANLDP SIHSTDLNSG  180
SQVSHVRQEP VFPEKASHIE SQVIEIDVNL QTNPNHTEVE AAGMAFNTES FDELIPPTSS  240
IGFTEPLIGQ DHSPRSSPHR EISSEFDMAT ADVFGIADLV DVLLQPSVFT DRQLSKFQPK  300
RSQHSQPKAG KTKSVSFKIL VESDASHQIL ETNGQGGESI GMGTSLAQMT DGDSVEHDPQ  360
PLSAVSTCSA DIQVGKKSPH CGTGKCQNIS EEPSKVIESQ DAEDLIEQIL NGLPAWSTAE  420
DDGSSKSSRK LRKRTSTQSH SAEHDGRTSE DYNDDLSSVS QMDEDRSDNE YTMEDMSKQK  480
MGSKNLKKKT SESKKPVQRN RKASAKPDST FTRQEKHPVG TKRKRRLVDK TLLEKPENEI  540
DPKRISIKDL ILLAEAKEKI SSKEATASGR SIPKQRDANY PNKDQFDVDP FGDEQEGDED  600
NNSHHVNSRK LNYHSYLNKS QSTRWSKLET DLFYQGVRQF GTDFAMIKQL FPNRTRHQVK  660
LKFKNEERKK PLQIADALLH RSKDNSHFEL VIQQLQAQSK QGKEDESHEP SVASEDKCGD  720
EDTNQEVNKF DDELEGSFDW DDNASYSPGK VKDILGDLFS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39160.1	4e-38	MYB_related family protein

Link Out ? help Back to Top
Ensembl	Dr10008.1