PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr09641.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family HRT-like
Protein Properties Length: 644aa    MW: 72627.8 Da    PI: 8.7778
Description HRT-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr09641.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HRT-like37.93.1e-12263293131
   HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                iCG++ +dGs+C+r+Pv  +K C +HKG+Ri
  Dr09641.1 263 ICGAANGDGSICRRKPVLRNKXCMQHKGKRI 293
                8*****************************7 PP
2HRT-like49.47.9e-16366396131
   HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                iC v+l+dG++C+ +P +gRKRCe HKGmR+
  Dr09641.1 366 ICRVLLRDGNICRSKPFPGRKRCEDHKGMRV 396
                8*****************************7 PP
3HRT-like52.11.1e-16426456131
   HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                iCGv l+dG vC+ +P +gRKRCe HKGm++
  Dr09641.1 426 ICGVFLGDGDVCQSKPFPGRKRCEYHKGMKV 456
                8****************************97 PP
4HRT-like47.62.9e-15486516131
   HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                iCGv+ +dG+vC+    +gRKRCe HKGmRi
  Dr09641.1 486 ICGVLFGDGNVCQSMRLPGRKRCEYHKGMRI 516
                8*****************************7 PP
5HRT-like443.7e-14547576130
   HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 
                iCGv+l+dG+vC+ +P +gRKRCe H G R
  Dr09641.1 547 ICGVLLGDGNVCRSKPFRGRKRCEDHRGIR 576
                8***************************88 PP
6HRT-like49.95.3e-16608638131
   HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                +CGv l dG+vC+r P++gRKRCe HKG+Ri
  Dr09641.1 608 TCGVFLADGNVCQRIPIRGRKRCEHHKGRRI 638
                7*****************************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 644 aa     Download sequence    
MSSRLKREEC KRTKHDSVFS KWQILIGPRD WEDHALGKDG VERYRIHNLP PCSSCPGLYE  60
LGISEIPREG HKSRGHPSDX IVVVYLGQAD NVRARLQQYG RAGSHLERGN SIVCANNNKD  120
LCLVKGPGLF KEVFSKGYSV LFRWAPMIDK KEAEKIESKL LSTFDYAWNT RANGTSRRED  180
VLNKISSTMT GQPIPKVLKN LQEWKQLTFN KKXGIKISGS VPPDKLGSSN FLKHYLIPLX  240
RKVSKILPQP NEGDEVLSSE HDICGAANGD GSICRRKPVL RNKXCMQHKG KRIILYGHIK  300
SKEVLPSTYN SSLVGLLIED NSLCMELPCN ETQQCEKLRE ISPIENLKTE DESLDVEYDH  360
SKEYQICRVL LRDGNICRSK PFPGRKRCED HKGMRVTGII SMTTKECLAK EISSDTELDP  420
CEEYQICGVF LGDGDVCQSK PFPGRKRCEY HKGMKVTGII SMTTRECLAK GISSDTELDP  480
CEDYQICGVL FGDGNVCQSM RLPGRKRCEY HKGMRINGII SRTPREFSIA KITPSDGELD  540
PCEGNQICGV LLGDGNVCRS KPFRGRKRCE DHRGIRXDGI TSRTTRECSI TKKVSSGAEI  600
XHCQEYQTCG VFLADGNVCQ RIPIRGRKRC EHHKGRRISR ITCQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56780.11e-87HRT-like family protein