PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr09640.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

HRT-like

Protein Properties

Length: 520aa MW: 59252.4 Da PI: 9.2064

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr09640.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	44.2	3.1e-14	266	294	1	29
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGm 29 iCGv+ +dGs+C+r+Pv +KRC HKG+ Dr09640.1 266 ICGVTDGDGSICRRKPVLRNKRCLLHKGK 294 8***************************7 PP
2	HRT-like	45	1.8e-14	369	399	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGv+l+ G+vC+ +P gRKRC HK mR+ Dr09640.1 369 ICGVLLSYGNVCRSKPLLGRKRCDDHKYMRV 399 8*****************************7 PP
3	HRT-like	46.3	7e-15	429	459	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGv+l++G+vC+ P +gR RCe HKGmR+ Dr09640.1 429 ICGVLLGHGNVCRSRPSRGRARCEDHKGMRV 459 8*****************************7 PP
4	HRT-like	50.3	4.1e-16	486	515	2	31
HRT-like 2 CGviledGsvCkrqPvkgRKRCeeHKGmRi 31 CGv l +G+vC+r Pv+gR+RCe HKG+R+ Dr09640.1 486 CGVSLXNGNVCQRMPVQGRQRCEVHKGQRV 515 *****************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 520 aa Download sequence
MSYRSKREEC KHTEHDSDFS KWQVLIGPKD WEDYTLGKDG VXRYRIHNLP QCFSCSGLYE 60 LAISKIPIEG RKSREPPPDA IVVVYLGHSD NVRARLQEYG RSGSHLERGN PSVCANNFKD 120 LCLVKGPGLF KEAFSKGYSI LFRWAXVSMV MTDKKEAKKI ESKLLDTFDY XWNTRANGTS 180 RRDXVLKISS TMTGQPIPKV LNNLQEWKQL TFNKKVGIMI SESVPPDKLG SSNYLQHFLI 240 PXVRKVSRIQ PRPNEGGEVL NSGYDICGVT DGDGSICRRK PVLRNKRCLL HKGKWIISNG 300 HITSKEASXS TXNSSLVRLA IEDSSRFIEL PCNGTQQCEE LRERSPTENF HTEDKSVDVE 360 HDHSEEYHIC GVLLSYGNVC RSKPLLGRKR CDDHKYMRVN GIIPRTAREF TITNITSSEE 420 LDPCEESQIC GVLLGHGNVC RSRPSRGRAR CEDHKGMRVN SIISRTTIRE CSSRAATYHF 480 QEYQRCGVSL XNGNVCQRMP VQGRQRCEVH KGQRVRRITY

Sequence ? help Back to Top

Protein Sequence Length: 520 aa Download sequence

MSYRSKREEC KHTEHDSDFS KWQVLIGPKD WEDYTLGKDG VXRYRIHNLP QCFSCSGLYE  60
LAISKIPIEG RKSREPPPDA IVVVYLGHSD NVRARLQEYG RSGSHLERGN PSVCANNFKD  120
LCLVKGPGLF KEAFSKGYSI LFRWAXVSMV MTDKKEAKKI ESKLLDTFDY XWNTRANGTS  180
RRDXVLKISS TMTGQPIPKV LNNLQEWKQL TFNKKVGIMI SESVPPDKLG SSNYLQHFLI  240
PXVRKVSRIQ PRPNEGGEVL NSGYDICGVT DGDGSICRRK PVLRNKRCLL HKGKWIISNG  300
HITSKEASXS TXNSSLVRLA IEDSSRFIEL PCNGTQQCEE LRERSPTENF HTEDKSVDVE  360
HDHSEEYHIC GVLLSYGNVC RSKPLLGRKR CDDHKYMRVN GIIPRTAREF TITNITSSEE  420
LDPCEESQIC GVLLGHGNVC RSRPSRGRAR CEDHKGMRVN SIISRTTIRE CSSRAATYHF  480
QEYQRCGVSL XNGNVCQRMP VQGRQRCEVH KGQRVRRITY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	5e-79	HRT-like family protein

Link Out ? help Back to Top
Ensembl	Dr09640.1