PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr09216.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

Protein Properties

Length: 921aa MW: 100812 Da PI: 6.8366

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr09216.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	56.6	4.6e-18	356	455	1	98
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 f+kvl+ sd+++ grlvlpk +ae++ ++++e+ l+++d +g++W +++++ +++s++yvl+ G ++ +L++gD+v+F++++ e++l +++ Dr09216.1 356 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLKIQDVNGKEWHFQFRFwpNNNSRMYVLE-GVTPCIQSLQLQAGDTVTFSRMD-PEGKLIMGF 453 99************************555566778***********99899999999.*******************876.677677766 PP E- CS B3 97 fr 98 ++ Dr09216.1 454 RK 455 65 PP

Sequence ? help Back to Top
Protein Sequence Length: 921 aa Download sequence
MEMQRCMNSV CGVAEPGGGE WRKGWDLRSG KFAQLSKNLA GVNAFPVGRQ GLHCGCIASK 60 SSVCLLDHGG VQCVSCMKNA GLSSTPSEVI HDVAPDAAPG VLALPAGNIK DENSNDLGTK 120 LAGSAGDVQS SSAEKTDDDA RNKGEIIRSG KQIEVNGQNS LFPAQRDSIS ESFGTNTKEQ 180 AALQMREXGM XTFSNGNQGR TSHSHKSQQN DRRDAATENV ISNPHETRLS ISLGTSNPSN 240 TIEAGLSVGL SSMSLPPACV VLEAREENKG LPSFQHVQRA HHLLPVPPKM DNAVALEASK 300 NMLSHIRVAR PPGEGRGKNQ LLPRYWPRIT DQELRQISGD FLNLSLSSNS TIVPLFEKVL 360 SASDAGRIGR LVLPKACAEA YFPPISQPEG LPLKIQDVNG KEWHFQFRFW PNNNSRMYVL 420 EGVTPCIQSL QLQAGDTVTF SRMDPEGKLI MGFRKAANSL QSQDTQASVT ANTGLASDIF 480 FSSLNGNLPI ISGYSGLRQS MKGPEDLNMS SLSGYMNSAD FDIWHKTDKH GAGMNEGFTL 540 QQPSLLPDKK RSRTIGTKSK RLHMDNDEAL DLKINWEEAQ DLLLPNPNAK PTIVIIDNTE 600 FEEYDEPPIF GKRTIFTAGM TGVQDQWIQC DECLKWRRIP VHVLPPSKWT CADNSWDRKR 660 SLCSVPDELS VKDMQNLLQE NAELKRRKVA INVKPNTPEP ESAGLDALAT AAVIGETVTH 720 PAPSVATTTR HPRHRPGCSC IVCIQPPSGK GPKHDPSCMC NVCVTVKRRF KTLMMRKKKR 780 QSELEEAEAQ KKVAWTNKEE TEGNNTLRAV QPIEPPQWEN FGQLDLNSHP GRSEDRVSMM 840 TLLQVANRPL ETYLKQNGLT SLASDQQASS SSFTVAQDAA ESEGRPPDES YMVPIARERE 900 SGAVEEGYCR VNEVNNDGAA A

Sequence ? help Back to Top

Protein Sequence Length: 921 aa Download sequence

MEMQRCMNSV CGVAEPGGGE WRKGWDLRSG KFAQLSKNLA GVNAFPVGRQ GLHCGCIASK  60
SSVCLLDHGG VQCVSCMKNA GLSSTPSEVI HDVAPDAAPG VLALPAGNIK DENSNDLGTK  120
LAGSAGDVQS SSAEKTDDDA RNKGEIIRSG KQIEVNGQNS LFPAQRDSIS ESFGTNTKEQ  180
AALQMREXGM XTFSNGNQGR TSHSHKSQQN DRRDAATENV ISNPHETRLS ISLGTSNPSN  240
TIEAGLSVGL SSMSLPPACV VLEAREENKG LPSFQHVQRA HHLLPVPPKM DNAVALEASK  300
NMLSHIRVAR PPGEGRGKNQ LLPRYWPRIT DQELRQISGD FLNLSLSSNS TIVPLFEKVL  360
SASDAGRIGR LVLPKACAEA YFPPISQPEG LPLKIQDVNG KEWHFQFRFW PNNNSRMYVL  420
EGVTPCIQSL QLQAGDTVTF SRMDPEGKLI MGFRKAANSL QSQDTQASVT ANTGLASDIF  480
FSSLNGNLPI ISGYSGLRQS MKGPEDLNMS SLSGYMNSAD FDIWHKTDKH GAGMNEGFTL  540
QQPSLLPDKK RSRTIGTKSK RLHMDNDEAL DLKINWEEAQ DLLLPNPNAK PTIVIIDNTE  600
FEEYDEPPIF GKRTIFTAGM TGVQDQWIQC DECLKWRRIP VHVLPPSKWT CADNSWDRKR  660
SLCSVPDELS VKDMQNLLQE NAELKRRKVA INVKPNTPEP ESAGLDALAT AAVIGETVTH  720
PAPSVATTTR HPRHRPGCSC IVCIQPPSGK GPKHDPSCMC NVCVTVKRRF KTLMMRKKKR  780
QSELEEAEAQ KKVAWTNKEE TEGNNTLRAV QPIEPPQWEN FGQLDLNSHP GRSEDRVSMM  840
TLLQVANRPL ETYLKQNGLT SLASDQQASS SSFTVAQDAA ESEGRPPDES YMVPIARERE  900
SGAVEEGYCR VNEVNNDGAA A

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	767	778	KRRFKTLMMRKK
2	767	780	KRRFKTLMMRKKKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32010.1	0.0	B3 family protein

Link Out ? help Back to Top
Ensembl	Dr09216.1