PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr08852.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family MYB_related
Protein Properties Length: 343aa    MW: 38030.4 Da    PI: 8.4461
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr08852.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.16.4e-11555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT eE+  l+ +v ++G g W+tI +          R+  ++k++w++
        Dr08852.1  5 KQKWTSEEESALKAGVVKHGAGKWRTILKDPEfsgilCLRSNVDLKDKWRN 55
                     79***********************************66**********99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    
MGAPKQKWTS EEESALKAGV VKHGAGKWRT ILKDPEFSGI LCLRSNVDLK DKWRNMSVVA  60
NGWGSREKAR IAFKKSQHAL KHDDNSMDHA TGEEDFDDEV EAKPLPNSPE RLQIRGSQKL  120
SLKLESLIFE AITTLKEPTG SNKKAIAQYI EDQHYPPPPD LKRRLSTKLK ALTACRKLIK  180
VKRKYRIAPG PALFERRNSE GRVRGPVIAE KDDFKPLLKS QIDAELARMR TMTAEEAAAA  240
AAQAVAEAEA AMAEAEEAAK EAEAAEADAQ EAQAFAEAAM RTLKNRNASR LVGVLAKYHS  300
LLLYCTEYTY IYTVLYHSDA MPELLGGCVD CTATHQVEAR NVP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.16e-78MYB_related family protein