PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Dr08276.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
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Family | LFY | ||||||||
Protein Properties | Length: 420aa MW: 46355.2 Da PI: 8.7039 | ||||||||
Description | LFY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FLO_LFY | 598 | 2e-182 | 1 | 389 | 1 | 386 |
FLO_LFY 1 mdp.eafsaslfkwdpraaaaapparlleeaavseapleaaaaaaarklreleelfkayGvryltvakiaelGftvstLvdmkdeelddlmkslseifrl 99 mdp +afsa+ f+wdpr+aa +pp++ + +p a+++relee+f++yGvr +tva+++elGft+stL +m++ee+dd+m++l+++fr+ Dr08276.1 1 MDPgDAFSANKFRWDPRPAA-PPPQHH---H----EP--------AERARELEEVFEGYGVRGATVARMGELGFTASTLAGMREEEVDDMMAALAHLFRW 84 666366**********9766.444322...2....22........34579************************************************** PP FLO_LFY 100 dllvGeryGikaavraerrrlee................eeaekkrrkllsedeetaldalsqeglseepvqeekeaagsggeglgeaelvaaee.kkse 182 dllvGeryGikaa+raerrrl++ a ++ lls d+ ++ldalsqeglseepvq+e+eaagsg+eg g++ + + ++ ++++ Dr08276.1 85 DLLVGERYGIKAALRAERRRLDSlrlqqglqfqhqhlagVAAGSRPLLLLSPDHPHNLDALSQEGLSEEPVQQEREAAGSGEEGGGRRVSNKGKQqQQHQ 184 ***********************999988888887776533344444577******************************99886555444444313333 PP FLO_LFY 183 eekkkaskkkqkrkkkkelkseede..deeeeededeegsgedgeerqrehPfivtepgevargkknGLDYLfdLyeqCrefLlqvqkiakerGekcPtk 280 ++++k ++++kr kkk+++ ed+ d+++e++ ++ g g erqrehPfivtepgevar+kknGLDYLf+Ly+qCr+fLlqvq+iakerG+kcPtk Dr08276.1 185 HQQMKG-SSNSKRSKKKKSHGGEDHlsDSDSESEGSGGGFGCAVGERQREHPFIVTEPGEVARAKKNGLDYLFHLYDQCRDFLLQVQAIAKERGDKCPTK 283 333333.22333333333333344400333333334444555666******************************************************* PP FLO_LFY 281 vtnqvfryakkagasyinkPkmrhYvhCYalhcLdeeasnalrrafkergenvGawrqacykplvaiaarqgwdidavfnahprLsiWYvPtkLrqLChl 380 vtnqvfryakkagasyinkPkmrhYvhCYalhcL+ee snalrra+kergenvGawrqacykplvaiaar+gwdidavfnahprL+iWYvPtkLrqLChl Dr08276.1 284 VTNQVFRYAKKAGASYINKPKMRHYVHCYALHCLEEEVSNALRRAYKERGENVGAWRQACYKPLVAIAARHGWDIDAVFNAHPRLAIWYVPTKLRQLCHL 383 **************************************************************************************************** PP FLO_LFY 381 erskas 386 +rs+a+ Dr08276.1 384 ARSQAA 389 ***986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 420 aa Download sequence |
MDPGDAFSAN KFRWDPRPAA PPPQHHHEPA ERARELEEVF EGYGVRGATV ARMGELGFTA 60 STLAGMREEE VDDMMAALAH LFRWDLLVGE RYGIKAALRA ERRRLDSLRL QQGLQFQHQH 120 LAGVAAGSRP LLLLSPDHPH NLDALSQEGL SEEPVQQERE AAGSGEEGGG RRVSNKGKQQ 180 QQHQHQQMKG SSNSKRSKKK KSHGGEDHLS DSDSESEGSG GGFGCAVGER QREHPFIVTE 240 PGEVARAKKN GLDYLFHLYD QCRDFLLQVQ AIAKERGDKC PTKVTNQVFR YAKKAGASYI 300 NKPKMRHYVH CYALHCLEEE VSNALRRAYK ERGENVGAWR QACYKPLVAI AARHGWDIDA 360 VFNAHPRLAI WYVPTKLRQL CHLARSQAAA AAAGGSGLGS ASASCLPVPP PPPPPPPPMY |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 195 | 201 | KRSKKKK |
2 | 198 | 203 | KKKKSH |
3 | 199 | 204 | KKKKSH |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61850.1 | 1e-106 | LFY family protein |
Link Out ? help Back to Top | |
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Ensembl | Dr08276.1 |