PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr08159.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

FAR1

Protein Properties

Length: 491aa MW: 54258.5 Da PI: 6.1746

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr08159.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	79.5	6.3e-25	103	189	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn+YAk+ GFsvrk + k+ ++g+i r f Cs+eg r++++++ +r++r+++rt+Cka+++ k ++d +w v k++leHnH+la Dr08159.1 103 EFYNSYAKRKGFSVRKGHLAKR-KDGSIRVRIFLCSNEGLRQTHRTH--ITRKPRVNERTNCKARIEFKVDRDYVWAVRKVNLEHNHPLA 189 6***************9997.8899***********99877..99***********************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 491 aa Download sequence
MQESGNSSSG DDFIEACPDN AFVTTEEDPS CDEERADLDV DEKLNSTQDA PGEDSLSSKE 60 SEDASNADNT VVTDRLPAPK AVGNMLLEPE VGMLFHSEDE AFEFYNSYAK RKGFSVRKGH 120 LAKRKDGSIR VRIFLCSNEG LRQTHRTHIT RKPRVNERTN CKARIEFKVD RDYVWAVRKV 180 NLEHNHPLAS PSKSFMLRSH RKIWRSQLGV ICEVENDEAG EDPHGAECHA IAVAIKSSAS 240 KDALELFENG LDQLMGEVDN LLHNAPNDGE QGRRKARPKG AHEKKRKRDA QDACKASDAV 300 TIDNPSQSKG QIDDGTAGVM IDESSHVPPY NREDLTLPYI NAIPMQPNGI SGYASFPPET 360 VISNQASFAP PQGIFDHTIT SLHVGDPNKP RSTNSGSVGG HMPIMPGQSN NYTNWELQSF 420 NIPNIVMSHR HLSQSVHSNV PSKQQALSHK LNLDINKGVH LLSFRSLPFL LAYAAGVNIF 480 LMDVCLYAVV L

Sequence ? help Back to Top

Protein Sequence Length: 491 aa Download sequence

MQESGNSSSG DDFIEACPDN AFVTTEEDPS CDEERADLDV DEKLNSTQDA PGEDSLSSKE  60
SEDASNADNT VVTDRLPAPK AVGNMLLEPE VGMLFHSEDE AFEFYNSYAK RKGFSVRKGH  120
LAKRKDGSIR VRIFLCSNEG LRQTHRTHIT RKPRVNERTN CKARIEFKVD RDYVWAVRKV  180
NLEHNHPLAS PSKSFMLRSH RKIWRSQLGV ICEVENDEAG EDPHGAECHA IAVAIKSSAS  240
KDALELFENG LDQLMGEVDN LLHNAPNDGE QGRRKARPKG AHEKKRKRDA QDACKASDAV  300
TIDNPSQSKG QIDDGTAGVM IDESSHVPPY NREDLTLPYI NAIPMQPNGI SGYASFPPET  360
VISNQASFAP PQGIFDHTIT SLHVGDPNKP RSTNSGSVGG HMPIMPGQSN NYTNWELQSF  420
NIPNIVMSHR HLSQSVHSNV PSKQQALSHK LNLDINKGVH LLSFRSLPFL LAYAAGVNIF  480
LMDVCLYAVV L

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	273	288	RRKARPKGAHEKKRKR
2	278	287	PKGAHEKKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	2e-17	FAR1 family protein

Link Out ? help Back to Top
Ensembl	Dr08159.1