PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr07876.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

AP2

Protein Properties

Length: 565aa MW: 63174.9 Da PI: 7.4189

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr07876.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	51.2	3e-16	237	296	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g ++ ++++lg ++ +e+Aa+a++ a++k++g Dr07876.1 237 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqtRKgRQVYLGGYDMEEKAARAYDLAALKYWG 296 78*****************988886678446***********************98 PP
2	AP2	22.4	3e-07	339	373	1	38
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgt 38 s y+GV+++++ grW A+I + +k +lg+f Dr07876.1 339 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSK 373 57**************988532...5*****965 PP

Sequence ? help Back to Top
Protein Sequence Length: 565 aa Download sequence
MMKSLNDNSN SNSNNNNNNS NSNWLGMELP SETHHAPNDH HSSHHHHHHQ PPANFFLAPP 60 LYYGVSDSSP LYSHLSFMPL KSDGSLCLME ALSRSSHPQG MLGITQEPKL EDFLGNNERE 120 AMALSLDSIY MQPLQEEMCS EMYQPAALDF PTTLRNNWVS RHYTADVSPI GFGDLQPLSL 180 SMSPGSQSSC VTAPQQLSSS TTTTTNAAIP TAPTASTDRK KQPVHRKSID TFGQRTSQYR 240 GVTRHRWTGR YEAHLWDNSC KKEGQTRKGR QVYLGGYDME EKAARAYDLA ALKYWGPSTH 300 INFPLENYHD ELEDMKNMSR QEYVAHLRRK SSGFSRGASI YRGVTRHHQH GRWQARIGRV 360 AGNKDLYLGT FSKFKLFLKY QSCSLTEIVD EFTAVKLSGT QEEAAEAYDI AAIKFRGLNA 420 VTNFDITRYD VERIMASNTL LPGEQARRNK AIESGNAEDR NNNNNNNNAI DQKSSIAVED 480 YHGMFNIDNN NNNNNTTQLS NTSSLVSSLS SSREGSPDRN GLSVLFAKPL NSWIAGTQQQ 540 QQLRPSAAVA TMAAQLPVFA AWNDV

Sequence ? help Back to Top

Protein Sequence Length: 565 aa Download sequence

MMKSLNDNSN SNSNNNNNNS NSNWLGMELP SETHHAPNDH HSSHHHHHHQ PPANFFLAPP  60
LYYGVSDSSP LYSHLSFMPL KSDGSLCLME ALSRSSHPQG MLGITQEPKL EDFLGNNERE  120
AMALSLDSIY MQPLQEEMCS EMYQPAALDF PTTLRNNWVS RHYTADVSPI GFGDLQPLSL  180
SMSPGSQSSC VTAPQQLSSS TTTTTNAAIP TAPTASTDRK KQPVHRKSID TFGQRTSQYR  240
GVTRHRWTGR YEAHLWDNSC KKEGQTRKGR QVYLGGYDME EKAARAYDLA ALKYWGPSTH  300
INFPLENYHD ELEDMKNMSR QEYVAHLRRK SSGFSRGASI YRGVTRHHQH GRWQARIGRV  360
AGNKDLYLGT FSKFKLFLKY QSCSLTEIVD EFTAVKLSGT QEEAAEAYDI AAIKFRGLNA  420
VTNFDITRYD VERIMASNTL LPGEQARRNK AIESGNAEDR NNNNNNNNAI DQKSSIAVED  480
YHGMFNIDNN NNNNNTTQLS NTSSLVSSLS SSREGSPDRN GLSVLFAKPL NSWIAGTQQQ  540
QQLRPSAAVA TMAAQLPVFA AWNDV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37750.1	1e-124	AP2 family protein

Link Out ? help Back to Top
Ensembl	Dr07876.1