PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr07582.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

FAR1

Protein Properties

Length: 782aa MW: 89636.4 Da PI: 8.4337

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr07582.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	40.9	2.9e-13	28	58	4	32
GATA 4 Cgttk..TplWRrgpdgnktLCnaCGlyyrk 32 Cg + Tp++Rrgp+g++tLCnaCG+ + k Dr07582.1 28 CGISAksTPHMRRGPEGPRTLCNACGIAWTK 58 6544444**********************98 PP
2	FAR1	87	2.7e-27	100	185	1	88
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fYn+YA ++GFsvrks+ ks++n i +rtfvCs+eg+r+++k + ++ +r+++etr+gC a+l++k+ +gk++v++++ eHnH+ Dr07582.1 100 EFYNKYAGHIGFSVRKSSADKSSENV-IRSRTFVCSREGFRKDKKGA-KEVKRPKPETRIGCPARLTIKLVPNGKYRVSEFVPEHNHQ 185 6******************95555.************9999.999**********************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 782 aa Download sequence
MLNELASLKC RVQKHSVLHK SITKCLRCGI SAKSTPHMRR GPEGPRTLCN ACGIAWTKSL 60 NKQGKLRKVI DFDAPSDDAT SEKMVPEVNM EFESEDKAYE FYNKYAGHIG FSVRKSSADK 120 SSENVIRSRT FVCSREGFRK DKKGAKEVKR PKPETRIGCP ARLTIKLVPN GKYRVSEFVP 180 EHNHQPAPPS TTHLLRSHRI TTEVQAAEAD LSDDSGTTPR STNEPAARQV GGFRNVTFLP 240 AEYKNHLRSK RMKAMQIGDA GGVLKYLQSM QLNNPSFFYA IQVDEDDKLT NVFWADAKSM 300 KDFSYFGDVV CFDTTYKTNG YGRPFAPFIG VNHHKQTVIF GAALIYDETI ESFKWLLETF 360 KIAMQGKQPK TILTDQSMAI TSAISMAWPG TIQRLCLWHV YQNASKHLNH VFQGSKTFSK 420 DFARCIYDYE DEEEFLTAWR MILEKYDLRN NEWLGKLFED RDKWALPYRR EIFCADIKST 480 LQNESLSNVL KKYLSPQLDL LSFFKHYERV VDEHRYAELQ ADFQASQSFP RIPPSKMLRQ 540 AANLYTPVVF EIFRKEFEMF MDCMLYSCGE VETTSEYKVI VTEKPKEHFV SFDPSDCSVI 600 CTCKKFDFMG IQCCHVLKVL DFRNIKELPL RYFLKRWCKD AKTGPEKDDK GITVDGGPKS 660 PTTTPVMHAP LPSQPHLGFH PMAEYSQECP VSDLHHQTVH GATQLSQGFS NTDMHSQPFF 720 GSSHLSQRTT ERDRQLCFRS LYREQSSLFC LGYKLNKLMP HSCEILLCDE GITSSTMRKV 780 DD

Sequence ? help Back to Top

Protein Sequence Length: 782 aa Download sequence

MLNELASLKC RVQKHSVLHK SITKCLRCGI SAKSTPHMRR GPEGPRTLCN ACGIAWTKSL  60
NKQGKLRKVI DFDAPSDDAT SEKMVPEVNM EFESEDKAYE FYNKYAGHIG FSVRKSSADK  120
SSENVIRSRT FVCSREGFRK DKKGAKEVKR PKPETRIGCP ARLTIKLVPN GKYRVSEFVP  180
EHNHQPAPPS TTHLLRSHRI TTEVQAAEAD LSDDSGTTPR STNEPAARQV GGFRNVTFLP  240
AEYKNHLRSK RMKAMQIGDA GGVLKYLQSM QLNNPSFFYA IQVDEDDKLT NVFWADAKSM  300
KDFSYFGDVV CFDTTYKTNG YGRPFAPFIG VNHHKQTVIF GAALIYDETI ESFKWLLETF  360
KIAMQGKQPK TILTDQSMAI TSAISMAWPG TIQRLCLWHV YQNASKHLNH VFQGSKTFSK  420
DFARCIYDYE DEEEFLTAWR MILEKYDLRN NEWLGKLFED RDKWALPYRR EIFCADIKST  480
LQNESLSNVL KKYLSPQLDL LSFFKHYERV VDEHRYAELQ ADFQASQSFP RIPPSKMLRQ  540
AANLYTPVVF EIFRKEFEMF MDCMLYSCGE VETTSEYKVI VTEKPKEHFV SFDPSDCSVI  600
CTCKKFDFMG IQCCHVLKVL DFRNIKELPL RYFLKRWCKD AKTGPEKDDK GITVDGGPKS  660
PTTTPVMHAP LPSQPHLGFH PMAEYSQECP VSDLHHQTVH GATQLSQGFS NTDMHSQPFF  720
GSSHLSQRTT ERDRQLCFRS LYREQSSLFC LGYKLNKLMP HSCEILLCDE GITSSTMRKV  780
DD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-136	FAR1 family protein

Link Out ? help Back to Top
Ensembl	Dr07582.1