PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr07566.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family GRAS
Protein Properties Length: 553aa    MW: 59886.9 Da    PI: 6.2079
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr07566.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS177.59.9e-551715452374
       GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn..........sseelaalkl........ 83 
                ++lL  cA a+++ +l+++q+lL  l+elasp+gd+++Rlaa+ ++AL+++l++   +l++a+p+ + ++            +                 
  Dr07566.1 171 EQLLNPCAAAIHAMNLSRVQHLLYVLNELASPTGDANHRLAAHGLRALKNHLSS--IGLAAAIPCGNLDTGGcgsppkcfatT--------Eprlfrsal 260
                689**************************************************9..889999999998876677555555321........112223346 PP

       GRAS  84 ..fsevsPilkfshltaNqaIleavege...ervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg....skeeleetgerLakfAeelg 173
                  f+evsP++ + + +aN  Il+ + +e   + +Hi+D+++s+G+QWp+Ll+aL+ Rp+g+p  + +T+ gs+++      +       + L ++A++l+
  Dr07566.1 261 ikFHEVSPWFAVPNSLANASILQNITQEnrpKSLHIVDIGVSHGIQWPTLLEALTRRPGGAPsLIHLTVAGSAAPArpfsTSPPAYDFPSHLLRYAKSLD 360
                88************************99888899************************99995679999999888888988899999************* PP

       GRAS 174 vpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse....sFlerflealeyysalfd 269
                ++++++        + +l+++  +pgE l+V+++++  +++            +L+ +++l P++vv++e e   +++     F+e+f +   + + +++
  Dr07566.1 361 LNLHITQ-------TETLSSITRSPGEILVVSSQFRASNTM------------LLRSIRDLDPDLVVLTELEDGVGGGgiggGFAEEFGRRTGVLWRFLE 441
                ****998.......345699999************888887............9******************87755545669***************** PP

       GRAS 270 sleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveee........sgslvl 360
                s++a +    + r + Er +++ e+  ++     e        e+W+ r+++ GF++++++e+a++  ++llrk++ ++++r+            + ++l
  Dr07566.1 442 STSAAF----KGREFAERTVVEGEAARMLDGGVGE------GREEWEGRMKALGFTELAFGEEAMDAGRALLRKYDgNWEMRMATGvagtgagaGAGVLL 531
                **9886....8888999999999999988766665......6677*******************************98899998445556666355556* PP

       GRAS 361 gWkdrpLvsvSaWr 374
                 Wk++++  +S Wr
  Dr07566.1 532 SWKGQSVSLCSLWR 545
                *************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    
MTMEEGPEPN LAPHHHLLDW LEDSASFIPS IPSFFDEPYT EIDLNPYEWW NHDHDYENQQ  60
QSIQTPASST AITTPSITTT TIIATTNQTT VPKSEYTTKK RKQQEEQSIR SQSQQSKRRN  120
NTDNEEGGAE NEEDGGSGGG EVQRKPGRKV QTKGSGSGSG NNGAKDVRWA EQLLNPCAAA  180
IHAMNLSRVQ HLLYVLNELA SPTGDANHRL AAHGLRALKN HLSSIGLAAA IPCGNLDTGG  240
CGSPPKCFAT TEPRLFRSAL IKFHEVSPWF AVPNSLANAS ILQNITQENR PKSLHIVDIG  300
VSHGIQWPTL LEALTRRPGG APSLIHLTVA GSAAPARPFS TSPPAYDFPS HLLRYAKSLD  360
LNLHITQTET LSSITRSPGE ILVVSSQFRA SNTMLLRSIR DLDPDLVVLT ELEDGVGGGG  420
IGGGFAEEFG RRTGVLWRFL ESTSAAFKGR EFAERTVVEG EAARMLDGGV GEGREEWEGR  480
MKALGFTELA FGEEAMDAGR ALLRKYDGNW EMRMATGVAG TGAGAGAGVL LSWKGQSVSL  540
CSLWRVAGTT ERR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.13e-90GRAS family protein