PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr07440.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

CO-like

Protein Properties

Length: 412aa MW: 45752.6 Da PI: 5.4584

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr07440.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	18.5	4.1e-06	4	42	5	39
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg....Htv 39 C+ + ++++ +C+++ +lC C + H+ H++ Dr07440.1 4 PCDYCRRERAMVYCRSDAACLCLPCDRNVHSAnaltHRH 42 6****************************9668888543 PP
2	zf-B_box	23.6	1.1e-07	46	87	4	39
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 C+++ +++++++C + ++ lC+ C +H + H++ Dr07440.1 46 LLCERCYSQPATIWCAEEKVSLCQHCDWIGHGSsvslmgHKR 87 57*************************999944777777876 PP
3	CCT	63.7	5.5e-22	355	398	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R+ a++RYkeK+k+RkFeKkirY sRK++A+ R+RvKGrFvk+ Dr07440.1 355 RDSAVKRYKEKKKNRKFEKKIRYTSRKVRADMRKRVKGRFVKAG 398 899**************************************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 412 aa Download sequence
MVSPCDYCRR ERAMVYCRSD AACLCLPCDR NVHSANALTH RHSRTLLCER CYSQPATIWC 60 AEEKVSLCQH CDWIGHGSSV SLMGHKRQGI SCYSGCPSAA ELYRIWSFGL DHPPIQESNC 120 KQVSGLMSIN ENSVSTYWSP SEANNTIDLT GLDMVHDLED VSKFNTWIGS SSASAVNSVP 180 CSFVQTAGSV TPKLCSNEKK DFGICKDNSL NEDFSVDDVD LSFENYEEIF GDFYNMSKFL 240 EDDDMDGLFE MDMPATNSTC QSEFIQEVKS MQASSGNVVS ADSVMSNPGM NADSNLCIPS 300 RQAHSSVSLS FSSLTGESSA GDYQDCGISS VLTNXXEPPW LPACLDSSSF SPANRDSAVK 360 RYKEKKKNRK FEKKIRYTSR KVRADMRKRV KGRFVKAGDA YDYDPLSQAR NC

Sequence ? help Back to Top

Protein Sequence Length: 412 aa Download sequence

MVSPCDYCRR ERAMVYCRSD AACLCLPCDR NVHSANALTH RHSRTLLCER CYSQPATIWC  60
AEEKVSLCQH CDWIGHGSSV SLMGHKRQGI SCYSGCPSAA ELYRIWSFGL DHPPIQESNC  120
KQVSGLMSIN ENSVSTYWSP SEANNTIDLT GLDMVHDLED VSKFNTWIGS SSASAVNSVP  180
CSFVQTAGSV TPKLCSNEKK DFGICKDNSL NEDFSVDDVD LSFENYEEIF GDFYNMSKFL  240
EDDDMDGLFE MDMPATNSTC QSEFIQEVKS MQASSGNVVS ADSVMSNPGM NADSNLCIPS  300
RQAHSSVSLS FSSLTGESSA GDYQDCGISS VLTNXXEPPW LPACLDSSSF SPANRDSAVK  360
RYKEKKKNRK FEKKIRYTSR KVRADMRKRV KGRFVKAGDA YDYDPLSQAR NC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48250.1	2e-91	CO-like family protein

Link Out ? help Back to Top
Ensembl	Dr07440.1