PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr07090.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

SBP

Protein Properties

Length: 879aa MW: 98674.1 Da PI: 6.2756

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr07090.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	115.2	3.6e-36	137	214	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv+gCe+d+ e+k yhrrh+vC ++++ap+v+++g+++r+CqqC++fh l +fDe+krsCrr+L++hn+rrr++++ Dr07090.1 137 RCQVPGCEVDIRELKGYHRRHRVCLKCANAPSVVLDGEHKRYCQQCGKFHILPDFDEGKRSCRRKLERHNKRRRRRST 214 6*************************************************************************9875 PP

Sequence ? help Back to Top
Protein Sequence Length: 879 aa Download sequence
MDSSSPPTTP RVSPMEDPLI AEDPSTWEWG TLFDFSVNDD DPLLFPWPGS SQDQPVVSLP 60 PVSPPPAPES SPASPSDGLG RIRKRDPRLV CSNFLAGRVP CACPELDAQE REEEEVAEAI 120 AGARKRVRMS GTAAVVRCQV PGCEVDIREL KGYHRRHRVC LKCANAPSVV LDGEHKRYCQ 180 QCGKFHILPD FDEGKRSCRR KLERHNKRRR RRSTNPSSNV EKEKELQGDL LADGNCDAQT 240 KEMMKASATG TPINNKTLDI ETILESDDGD GSPSSPVPSF QNVQCNSTMT LTASDETNKE 300 EKIDYSKPAL SSTFSNKSGY SSVCPTGRIS FKLYDWNPAE FPRRLRHQIF QWLANMPVEL 360 EGYIRPGCTI LTVFLAMPQF MWEMLSQDVA FYVRDMVSAP ESLFCGRGNI LVHLSNKIVQ 420 VMRGTYYLDL MRLFGAICMQ LPEIFAIGQN LLGLRRLQES MEIESEAFKE VSANLSRIQR 480 TKYGSSLMNI KMEVQVPRLH YVYPTYFEAG KPMEFVACGS NLDRPKFRFL VSFAGKYLVC 540 NSCYAITHET GMLNKENARN STEIPDHEML RISITQTESE VFGPAFIEVE NESGLSNFIP 600 VLFGNKRVCS ELARIQEAFD KTSSGSEKGC HTMINTENPD SCESLTSRQT AMSDILLDIG 660 WLIKNPSVEE SEVAFSSINI QRITCLLEFL TRNEFVNILE EILQNIDHII GEKGFHESVD 720 KTSDADFELF MKQVNHARDT LSQIFEHGHG SVDVRTLSHG VLVPRSPKSR TIRTFPSTDK 780 QQGSRNKQFP GSIDAISDSD ETVPLVPNHS QHCSPSSVLG WPRESWRDII PKTVMSSRFT 840 AFIMVSAVMC FAACIAVLHP QKAKEFTVTL RRCLFGSER

Sequence ? help Back to Top

Protein Sequence Length: 879 aa Download sequence

MDSSSPPTTP RVSPMEDPLI AEDPSTWEWG TLFDFSVNDD DPLLFPWPGS SQDQPVVSLP  60
PVSPPPAPES SPASPSDGLG RIRKRDPRLV CSNFLAGRVP CACPELDAQE REEEEVAEAI  120
AGARKRVRMS GTAAVVRCQV PGCEVDIREL KGYHRRHRVC LKCANAPSVV LDGEHKRYCQ  180
QCGKFHILPD FDEGKRSCRR KLERHNKRRR RRSTNPSSNV EKEKELQGDL LADGNCDAQT  240
KEMMKASATG TPINNKTLDI ETILESDDGD GSPSSPVPSF QNVQCNSTMT LTASDETNKE  300
EKIDYSKPAL SSTFSNKSGY SSVCPTGRIS FKLYDWNPAE FPRRLRHQIF QWLANMPVEL  360
EGYIRPGCTI LTVFLAMPQF MWEMLSQDVA FYVRDMVSAP ESLFCGRGNI LVHLSNKIVQ  420
VMRGTYYLDL MRLFGAICMQ LPEIFAIGQN LLGLRRLQES MEIESEAFKE VSANLSRIQR  480
TKYGSSLMNI KMEVQVPRLH YVYPTYFEAG KPMEFVACGS NLDRPKFRFL VSFAGKYLVC  540
NSCYAITHET GMLNKENARN STEIPDHEML RISITQTESE VFGPAFIEVE NESGLSNFIP  600
VLFGNKRVCS ELARIQEAFD KTSSGSEKGC HTMINTENPD SCESLTSRQT AMSDILLDIG  660
WLIKNPSVEE SEVAFSSINI QRITCLLEFL TRNEFVNILE EILQNIDHII GEKGFHESVD  720
KTSDADFELF MKQVNHARDT LSQIFEHGHG SVDVRTLSHG VLVPRSPKSR TIRTFPSTDK  780
QQGSRNKQFP GSIDAISDSD ETVPLVPNHS QHCSPSSVLG WPRESWRDII PKTVMSSRFT  840
AFIMVSAVMC FAACIAVLHP QKAKEFTVTL RRCLFGSER

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	199	211	RRKLERHNKRRRR
2	207	212	KRRRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18830.1	1e-159	SBP family protein

Link Out ? help Back to Top
Ensembl	Dr07090.1