PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr06304.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

TCP

Protein Properties

Length: 321aa MW: 34886.2 Da PI: 9.6139

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr06304.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	114.5	1.5e-35	54	140	1	79
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............ssssasec.eaesss 79 a+g+kdrhsk++T++g+RdRRvRl a++a++f+d+qd+LG+d++sk+++WL++ akpai++l+++ + e+ ++ss Dr06304.1 54 ATGRKDRHSKVCTAKGPRDRRVRLAAHTAIQFYDVQDRLGYDRPSKAVDWLIKHAKPAIDKLAELppwrpsdspippE-----ESpRKASSP 140 589**************************************************************8777665433321.....221111111 PP

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence
MKYYHLFQLR VSLENKATAS SSRQQRAPAR YRGAAALRGA GEIVEVQGGH IVRATGRKDR 60 HSKVCTAKGP RDRRVRLAAH TAIQFYDVQD RLGYDRPSKA VDWLIKHAKP AIDKLAELPP 120 WRPSDSPIPP EESPRKASSP ADVDHSSGFA FSGASPSFSF LPPSLDSDAI ADTIKSFIPM 180 AAAPPSTPLP ACNTRDLRLS LHSFHDQTFQ ESHQAHAFPI AFDERMVPWS LAEGVGSGAY 240 VFNAVPLHGQ SQLLAQRGPL QSSNSPLLRA WMDPIDHQQA PFGFASTAGF SSFRVPARIQ 300 GDEEADGISG KLPSASSASH H

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G53230.1	4e-57	TCP family protein

Link Out ? help Back to Top
Ensembl	Dr06304.1