PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Dr06295.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
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Family | C3H | ||||||||
Protein Properties | Length: 509aa MW: 55635.9 Da PI: 8.5284 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 34.3 | 4e-11 | 147 | 171 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C +++ t tCk+Gd+CkF H+ Dr06295.1 147 GEKDCAYYMLTRTCKFGDTCKFDHP 171 7889********************9 PP | |||||||
2 | zf-CCCH | 29.1 | 1.7e-09 | 198 | 224 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+++++t CkyG rCkF+H++ Dr06295.1 198 PGEADCPYYLKTQRCKYGFRCKFNHPK 224 57899********************96 PP | |||||||
3 | zf-CCCH | 30.2 | 7.5e-10 | 262 | 282 | 7 | 27 |
SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 7 rffartGtCkyGdrCkFaHgp 27 +f+a+tGtC++G++CkF+H++ Dr06295.1 262 QFYAKTGTCNFGATCKFHHPK 282 59*****************96 PP | |||||||
4 | zf-CCCH | 37.1 | 5.3e-12 | 325 | 350 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C+f+ +tG CkyG+ C+F+H++ Dr06295.1 325 GESDCPFYIKTGSCKYGAACRFNHPE 350 7889********************96 PP | |||||||
5 | zf-CCCH | 39.2 | 1.2e-12 | 402 | 425 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + +C+f+++tG+Ck+GdrCk+ H+ Dr06295.1 402 QIECDFYMKTGHCKFGDRCKYDHP 425 568********************9 PP | |||||||
6 | zf-CCCH | 36 | 1.1e-11 | 457 | 480 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 C ++++tGtCk+G++Ck+ H+p Dr06295.1 457 TVCAYYMKTGTCKFGPTCKYDHPP 480 57********************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 509 aa Download sequence |
MAYNYGSSYA GTGSASGLSS YSSRHSGAQD PYIPQSATIS SSRYHASDSD ASKYSSSVYV 60 PQSSSDIAAA VKVAASAQAS WGDKLGSASV VDPSSVKRLS ETLYHQTLLG THNSIGQSEA 120 LYSANSLIKR PRLETGSILP IYPQRPGEKD CAYYMLTRTC KFGDTCKFDH PLWVPEGGIP 180 DWKEIPVCHT NEPLPERPGE ADCPYYLKTQ RCKYGFRCKF NHPKDKANAS SVEVLNIVTI 240 LFYLRGPLRQ FVRFFSNSMC AQFYAKTGTC NFGATCKFHH PKDIQIPLTG HVNGHTGYGE 300 LALMYNRASV PALMHNTKGL PIRPGESDCP FYIKTGSCKY GAACRFNHPE RNFAFGSAMF 360 PSAATSLPFG ILNSAANIMQ TIDPRLTQAT LSMAIYPQRP GQIECDFYMK TGHCKFGDRC 420 KYDHPLDRSG SISAANQAGQ LNVKLTLAGL PRREGSTVCA YYMKTGTCKF GPTCKYDHPP 480 PGEAVAKATV HGNQQEEMEN TGEEKTAVV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12680.1 | 1e-159 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | Dr06295.1 |