PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr06197.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

CPP

Protein Properties

Length: 557aa MW: 60773.4 Da PI: 7.8758

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr06197.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	42	1.9e-13	88	127	2	42
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 ++k+CnC++skClk+YCeCfa+g++C+ C+C +C+N+ e+ Dr06197.1 88 KQKQCNCRHSKCLKLYCECFASGVYCDG-CNCVNCCNNVEN 127 89************************.******9875 PP
2	TCR	50.9	3e-16	172	210	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 k++kgC+Ckks+ClkkYCeCf+a+ Cse+CkC dCkN Dr06197.1 172 KHNKGCHCKKSNCLKKYCECFQANILCSENCKCIDCKNF 210 589***********************************5 PP

Sequence ? help Back to Top
Protein Sequence Length: 557 aa Download sequence
MSSMEPGVQP VAAEMPPKKL VRQLDFTAAF GASTAAAQAQ PQEKPSAQPL SQSSVPASRP 60 PVPMPVKPES PRSRARPIYE VKDSTPKKQK QCNCRHSKCL KLYCECFASG VYCDGCNCVN 120 CCNNVENEAA RQEAVEVTLE RNPNAFRPKI GNSPHAIRDI REEAGDLPLL GKHNKGCHCK 180 KSNCLKKYCE CFQANILCSE NCKCIDCKNF DGSEERRALF HGDHGGNLTY MQQAANAAAN 240 GAIGSSGYVS SPVSKKRKSQ DLSFSAAVKD QPINRLVQFQ PPNPLKTLGS ASFGTTPVAR 300 AVNSATPGPS KVVYRPLLAD IIQPDDVKEL CKLLVVVSGE AAKRFADTKV HDENPRQKED 360 QAEIALASSN QHRDHNQKEP DNRRTSADNC SHVSNADKMS CEESGFDGAS DVPKDGRPMS 420 PGTLALMCDE QDEMFMTSQC TNTSTRLSYD NNLTEVYAEQ ERCVLTEFRD CLWKLVTCGK 480 MKEEKYAMKA SKPETSPHPQ ASANNTITRG SISSTEEVGP GSSNAFPTFS NFLPPKAGRP 540 TTKENGNIKP KLENSEL

Sequence ? help Back to Top

Protein Sequence Length: 557 aa Download sequence

MSSMEPGVQP VAAEMPPKKL VRQLDFTAAF GASTAAAQAQ PQEKPSAQPL SQSSVPASRP  60
PVPMPVKPES PRSRARPIYE VKDSTPKKQK QCNCRHSKCL KLYCECFASG VYCDGCNCVN  120
CCNNVENEAA RQEAVEVTLE RNPNAFRPKI GNSPHAIRDI REEAGDLPLL GKHNKGCHCK  180
KSNCLKKYCE CFQANILCSE NCKCIDCKNF DGSEERRALF HGDHGGNLTY MQQAANAAAN  240
GAIGSSGYVS SPVSKKRKSQ DLSFSAAVKD QPINRLVQFQ PPNPLKTLGS ASFGTTPVAR  300
AVNSATPGPS KVVYRPLLAD IIQPDDVKEL CKLLVVVSGE AAKRFADTKV HDENPRQKED  360
QAEIALASSN QHRDHNQKEP DNRRTSADNC SHVSNADKMS CEESGFDGAS DVPKDGRPMS  420
PGTLALMCDE QDEMFMTSQC TNTSTRLSYD NNLTEVYAEQ ERCVLTEFRD CLWKLVTCGK  480
MKEEKYAMKA SKPETSPHPQ ASANNTITRG SISSTEEVGP GSSNAFPTFS NFLPPKAGRP  540
TTKENGNIKP KLENSEL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29000.1	1e-134	CPP family protein

Link Out ? help Back to Top
Ensembl	Dr06197.1