PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr06052.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

HB-PHD

Protein Properties

Length: 752aa MW: 82873.4 Da PI: 7.0847

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr06052.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	34.7	3e-11	582	624	13	55
HHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 13 eeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRake 55 + L + F +++yp ++++e+LA++lgLt +qV+ WF N R Dr06052.1 582 QKLLQSFGESQYPARHTKERLAAELGLTFQQVSKWFENTRRSL 624 678999*********************************9765 PP
2	PHD	42.5	1.5e-14	202	257	1	51
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ C+ +++++++lCdg C++ fH+kCl+++l se++p+g wlC+ C++k Dr06052.1 202 FCATCNTkdVTANNDIILCDGiCDRGFHQKCLNPPLLSENIPSGdeGWLCPACDCK 257 7****76667****88******************99*******985 PP

Sequence ? help Back to Top
Protein Sequence Length: 752 aa Download sequence
MAGASNSKSP KANMKRVVAK ESTNSAHKGK KISPKPGAQR YSLRSALNGV RVLRSMSNGK 60 SNSPVMSDKS NSRSRSKSKS KSPVKKSVSL PVQPVTERRK KKKVRKVTAD EFSKIRNRIY 120 YLLKRISYEQ NLIDAYSGEG WRGQSLEKIK PEKELERAKS EILRCKLKIR DLFHHLDSLL 180 SKGRFEDSLF DSEGQISSDD IFCATCNTKD VTANNDIILC DGICDRGFHQ KCLNPPLLSE 240 NIPSGDEGWL CPACDCKVDC FDLLNEFQGS DLTIENTWEN VFPEAAASTN SGMQHDESGF 300 PSDDSEDDDY DPDVPVVDEE DQEEGYSSEE SDSISLSEES GGLKHELQNK DLGLPSDDSE 360 DDDYDPNRQD IDEKTKKTRS SSDESDFSSD SDEFCALLSK ASDANEVSES CKPSTSSSER 420 RRASQRNKST INSAPLSLSE PNMNQENAIP VSEKTQHEHL DYKKLQAEGN GKTYYNSTDD 480 EDWSNVNTKK KGKGDPHSTK KKGSRRSKGK LAEDGGTVNS GLDLLQASQI SNELTPLGTQ 540 VRSEAHQVNM FVAERLGDSH GPDSNGNARP IPRRSLGGAI SQKLLQSFGE SQYPARHTKE 600 RLAAELGLTF QQVSKWFENT RRSLRASQAI TPLAVSQPGM NNRDESQAKE TNQAGIITPT 660 NGNAASASLI CVTTPSKTAA ASNSQGLYTG SSFSNGQNSG SGRGKRNKSV EDGKQEVQDV 720 STSNIVDKTR ELIDKDRQKA IARELRKRRK CM

Sequence ? help Back to Top

Protein Sequence Length: 752 aa Download sequence

MAGASNSKSP KANMKRVVAK ESTNSAHKGK KISPKPGAQR YSLRSALNGV RVLRSMSNGK  60
SNSPVMSDKS NSRSRSKSKS KSPVKKSVSL PVQPVTERRK KKKVRKVTAD EFSKIRNRIY  120
YLLKRISYEQ NLIDAYSGEG WRGQSLEKIK PEKELERAKS EILRCKLKIR DLFHHLDSLL  180
SKGRFEDSLF DSEGQISSDD IFCATCNTKD VTANNDIILC DGICDRGFHQ KCLNPPLLSE  240
NIPSGDEGWL CPACDCKVDC FDLLNEFQGS DLTIENTWEN VFPEAAASTN SGMQHDESGF  300
PSDDSEDDDY DPDVPVVDEE DQEEGYSSEE SDSISLSEES GGLKHELQNK DLGLPSDDSE  360
DDDYDPNRQD IDEKTKKTRS SSDESDFSSD SDEFCALLSK ASDANEVSES CKPSTSSSER  420
RRASQRNKST INSAPLSLSE PNMNQENAIP VSEKTQHEHL DYKKLQAEGN GKTYYNSTDD  480
EDWSNVNTKK KGKGDPHSTK KKGSRRSKGK LAEDGGTVNS GLDLLQASQI SNELTPLGTQ  540
VRSEAHQVNM FVAERLGDSH GPDSNGNARP IPRRSLGGAI SQKLLQSFGE SQYPARHTKE  600
RLAAELGLTF QQVSKWFENT RRSLRASQAI TPLAVSQPGM NNRDESQAKE TNQAGIITPT  660
NGNAASASLI CVTTPSKTAA ASNSQGLYTG SSFSNGQNSG SGRGKRNKSV EDGKQEVQDV  720
STSNIVDKTR ELIDKDRQKA IARELRKRRK CM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	97	103	ERRKKKK
2	98	103	RRKKKK
3	98	106	RRKKKKVRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19510.1	4e-82	HB-PHD family protein

Link Out ? help Back to Top
Ensembl	Dr06052.1