PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr06003.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

G2-like

Protein Properties

Length: 382aa MW: 42153.8 Da PI: 7.8325

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr06003.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100.9	8.3e-32	249	304	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rFv a++qLGG+++AtPk+i+elmkv+gLt+++vkSHLQkYRl+ Dr06003.1 249 KARRCWSPELHRRFVIALQQLGGAQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 304 68****************************************************97 PP
2	Myb_DNA-binding	39.7	1.1e-12	251	302	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r W++e++ ++v a +qlGg t+k I + m g+t ++ks++qky+ Dr06003.1 251 RRCWSPELHRRFVIALQQLGGAqvaTPKQIRELMKvDGLTNDEVKSHLQKYR 302 568***************99***************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 382 aa Download sequence
MASISPEMGL DLKLSATRSV SGFIREASAI EDGDARLAKV EEYLRILEEE KRKIEAFRRE 60 LPLSMILVSD VIGGLKEELE QWRGDRYACP VVEEFMPIKR SRLEDEGGMK VEIDCKDKMN 120 WMSSVQLWSD NYCQNEEISC KKNSLERMEA QSEKENQSLE PKSRAAGGAF IPFKGSSMAK 180 KEEKPAGPLP DLSLIPPSIK SSRPVVASAE DHPYGVSSGS KSVVAGRAHM SPPTSASLSL 240 QAQQQPPRKA RRCWSPELHR RFVIALQQLG GAQVATPKQI RELMKVDGLT NDEVKSHLQK 300 YRLHTRKAPN CVSQANRSVM VMGGGLWVSQ EHFTAASSQQ SASPSGSPQS PLQLTGASRA 360 VSLTAGDSYE EEDGKSESYS WK

Sequence ? help Back to Top

Protein Sequence Length: 382 aa Download sequence

MASISPEMGL DLKLSATRSV SGFIREASAI EDGDARLAKV EEYLRILEEE KRKIEAFRRE  60
LPLSMILVSD VIGGLKEELE QWRGDRYACP VVEEFMPIKR SRLEDEGGMK VEIDCKDKMN  120
WMSSVQLWSD NYCQNEEISC KKNSLERMEA QSEKENQSLE PKSRAAGGAF IPFKGSSMAK  180
KEEKPAGPLP DLSLIPPSIK SSRPVVASAE DHPYGVSSGS KSVVAGRAHM SPPTSASLSL  240
QAQQQPPRKA RRCWSPELHR RFVIALQQLG GAQVATPKQI RELMKVDGLT NDEVKSHLQK  300
YRLHTRKAPN CVSQANRSVM VMGGGLWVSQ EHFTAASSQQ SASPSGSPQS PLQLTGASRA  360
VSLTAGDSYE EEDGKSESYS WK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25550.1	1e-37	G2-like family protein

Link Out ? help Back to Top
Ensembl	Dr06003.1