PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr05776.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

AP2

Protein Properties

Length: 854aa MW: 96067.6 Da PI: 6.6554

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr05776.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	30.8	7.5e-10	568	624	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++n ++k+ + g + +e Aa ++ a++k++g Dr05776.1 568 SVYRGVTRHRWTGRFEAHLWDkHTWNPiQNKKGRQGAYEDEEAAAHTYDLAALKYWG 624 78*****************99998887877777999999************98 PP
2	AP2	52.3	1.4e-16	667	718	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++++grW+A+I + +k+ +lg+f t eeAa+a++ a+++++g Dr05776.1 667 SKYRGVARHHQNGRWEARIGRVLG---NKYLYLGTFNTQEEAAQAYDIAALEYRG 718 89**************988422...5***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 854 aa Download sequence
MAVSAFRSKS KRSTSVAPPN HVSSLRNRPA DDAEKKIPAR RSRSVSAVSR YAGAAAEPAE 60 VEFMNKRDNP LFSCSGSSPL SPSSESDVHC EVLEGGRSDF DSKRGRSVSR SSGFGKESSS 120 NRSLSSVSTG GRRRSVSRGH YGNSERKEGR ILKDGGVLDD TRNLHTWTSR HPPPDPWETS 180 SSCGRARNWE DGISTSSHSE TEDTLHRKGF LSDHSSKLVG DGGIYKTIRS EVRRAVYEVR 240 DDLQNVVKVR IVKINNGSVK RTENVVIMKA CAAIRQKNSA IINENVADCA SEFVDHSMTE 300 LVSDFRREYA TKLEQASIDR LKMSRRLTEE ALNYFDECVS ISTFDSSDFS SMEEPPPIST 360 VSATPIDNGR CSSSENLSSS TPKFSNDHLD HHEESDDQTQ CSLSFAESDC ALSSICSGRK 420 FSDPTLSNDN QVGQIDSDTP RSETYQFSFR HKQNETRRVH DIRHYLKNFE KDPRTEIARG 480 TKTRLSYNAD XYDLNTSAER LLSEKGCQQG GNFRNVFSDF SSRFAKPVLS PIAGSWSINN 540 HMLIWKRLEE FDQPLQSSIN GGSVKRSSVY RGVTRHRWTG RFEAHLWDKH TWNPIQNKKG 600 RQGAYEDEEA AAHTYDLAAL KYWGTDTILN FPVETYMKEY EDMQKMSKEE YLASLRRRSS 660 GFSRGVSKYR GVARHHQNGR WEARIGRVLG NKYLYLGTFN TQEEAAQAYD IAALEYRGLN 720 AVTNFDLSYY ITDLQPQPSM PQQPLPICTP SSIQLPEFKL EEQNQNSSSF QESLGITSQQ 780 EHQPLPLSDH PVVDHSNTEL LPWNICMETS HVSIDHSSDL SYFFDDAIFE GDIEHLFADI 840 GSAETEDGST KLHS

Sequence ? help Back to Top

Protein Sequence Length: 854 aa Download sequence

MAVSAFRSKS KRSTSVAPPN HVSSLRNRPA DDAEKKIPAR RSRSVSAVSR YAGAAAEPAE  60
VEFMNKRDNP LFSCSGSSPL SPSSESDVHC EVLEGGRSDF DSKRGRSVSR SSGFGKESSS  120
NRSLSSVSTG GRRRSVSRGH YGNSERKEGR ILKDGGVLDD TRNLHTWTSR HPPPDPWETS  180
SSCGRARNWE DGISTSSHSE TEDTLHRKGF LSDHSSKLVG DGGIYKTIRS EVRRAVYEVR  240
DDLQNVVKVR IVKINNGSVK RTENVVIMKA CAAIRQKNSA IINENVADCA SEFVDHSMTE  300
LVSDFRREYA TKLEQASIDR LKMSRRLTEE ALNYFDECVS ISTFDSSDFS SMEEPPPIST  360
VSATPIDNGR CSSSENLSSS TPKFSNDHLD HHEESDDQTQ CSLSFAESDC ALSSICSGRK  420
FSDPTLSNDN QVGQIDSDTP RSETYQFSFR HKQNETRRVH DIRHYLKNFE KDPRTEIARG  480
TKTRLSYNAD XYDLNTSAER LLSEKGCQQG GNFRNVFSDF SSRFAKPVLS PIAGSWSINN  540
HMLIWKRLEE FDQPLQSSIN GGSVKRSSVY RGVTRHRWTG RFEAHLWDKH TWNPIQNKKG  600
RQGAYEDEEA AAHTYDLAAL KYWGTDTILN FPVETYMKEY EDMQKMSKEE YLASLRRRSS  660
GFSRGVSKYR GVARHHQNGR WEARIGRVLG NKYLYLGTFN TQEEAAQAYD IAALEYRGLN  720
AVTNFDLSYY ITDLQPQPSM PQQPLPICTP SSIQLPEFKL EEQNQNSSSF QESLGITSQQ  780
EHQPLPLSDH PVVDHSNTEL LPWNICMETS HVSIDHSSDL SYFFDDAIFE GDIEHLFADI  840
GSAETEDGST KLHS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54320.3	4e-79	AP2 family protein

Link Out ? help Back to Top
Ensembl	Dr05776.1