PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr05161.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family ERF
Protein Properties Length: 309aa    MW: 34072.1 Da    PI: 4.8248
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr05161.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2591.2e-1898148155
        AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                ++++GVr+++ +g+++AeIrd +     r  r++lg+f taeeAa  ++ a+ +l+g
  Dr05161.1  98 TRFRGVRRRP-WGKYAAEIRDpW-----RrVRVWLGTFNTAEEAAMVYDSAAIQLRG 148
                589*******.**********88.....55*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    
MKLKRITMVS KPLSPAPAQC PRMLRISCDD YEATDSSSDD DDDEPCRRVK RYVQEIRFET  60
AKPAGKQQQQ QLNNNNKKKK KKKKPTPSPA LASDTTTTRF RGVRRRPWGK YAAEIRDPWR  120
RVRVWLGTFN TAEEAAMVYD SAAIQLRGPD ATTNFSHPPP PLPSPSPSPS PSPPTVNATS  180
TSGGYESGDE SHAVLSSPTS VLRPFSGDQG ESEKKESGGN VTGAAVRIPE EELGEFMLPF  240
EEVPLYSDFL GFGEAEPMMI FDDSAQIGFI SAADDLMRDL GDSSLPTWQG DDFFKDIADL  300
FPIEPLPAI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14784RRVKRYVQEIRFETAKPAGKQQQQQLNNNNKKKKKKKK
27783KKKKKKK
37884KKKKKKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.12e-31ERF family protein