PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr04929.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family C3H
Protein Properties Length: 312aa    MW: 31732.9 Da    PI: 9.6541
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr04929.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.52.5e-09100125227
                -S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                kt+lC+ +     Ck+Gd+C+FaHg+
  Dr04929.1 100 KTKLCNKYNTAEGCKFGDKCHFAHGE 125
                8***********************96 PP
2zf-CCCH38.22.4e-12279303126
                --S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                ykt+lC +f++ G C +GdrC+FaHg
  Dr04929.1 279 YKTKLCENFSK-GSCTFGDRCHFAHG 303
                9**********.*************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    
MDSGAAARKR GRPDAALNGN GGAKRPKETE SGLGSKSKPC TKFFSTSGCP FGEGCHFLHY  60
VPGGYNAVAQ MANLGNPAHA PPRNLMGPPA MPDGPAPAVK TKLCNKYNTA EGCKFGDKCH  120
FAHGERELGR PIIPSHDDRP MPPPMAGRMG GGRYEPPPPA GLAAASFGAS ATAKISVDAS  180
LAGAIIGKGG VNTKQICRTT GAKLSIREHE TDPNLRNIEL EGTFDQIKQA STLVRELIVN  240
ISATFPMAAK VAAGMAASGG GGGGGGGGGG GGGGPGSNYK TKLCENFSKG SCTFGDRCHF  300
AHGASELRKS GA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.12e-48C3H family protein